Gene : Seita.5G190300 S. italica v2.2
Defline:  (1 of 2) 2.1.1.33 - tRNA (guanine(46)-N(7))-methyltransferase / tRNA guanine 7-methyltransferase Genomic Order:  1903
Name:  ? Seita.5G190300 Secondary Identifier:  ? PAC:32684785
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G190300 0.5kb upstream 0.5kb upstream 3469 true scaffold_5: 24375378-24378846 Setaria italica
Seita.5G190300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24378347-24378846 Setaria italica
Seita.5G190300 0.5kb downstream 0.5kb downstream 3469 true scaffold_5: 24374878-24378346 Setaria italica
Seita.5G190300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24374878-24375377 Setaria italica
Seita.5G190300 1.0kb upstream 1.0kb upstream 3969 true scaffold_5: 24375378-24379346 Setaria italica
Seita.5G190300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24378347-24379346 Setaria italica
Seita.5G190300 1.0kb downstream 1.0kb downstream 3969 true scaffold_5: 24374378-24378346 Setaria italica
Seita.5G190300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24374378-24375377 Setaria italica
Seita.5G190300 2.0kb upstream 2.0kb upstream 4969 true scaffold_5: 24375378-24380346 Setaria italica
Seita.5G190300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24378347-24380346 Setaria italica
Seita.5G190300 2.0kb downstream 2.0kb downstream 4969 true scaffold_5: 24373378-24378346 Setaria italica
Seita.5G190300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24373378-24375377 Setaria italica
Seita.5G190300 5.0kb upstream 5.0kb upstream 7969 true scaffold_5: 24375378-24383346 Setaria italica
Seita.5G190300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24378347-24383346 Setaria italica
Seita.5G190300 5.0kb downstream 5.0kb downstream 7969 true scaffold_5: 24370378-24378346 Setaria italica
Seita.5G190300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24370378-24375377 Setaria italica
Seita.5G190300 10.0kb upstream 10.0kb upstream 12969 true scaffold_5: 24375378-24388346 Setaria italica
Seita.5G190300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24378347-24388346 Setaria italica
Seita.5G190300 10.0kb downstream 10.0kb downstream 12969 true scaffold_5: 24365378-24378346 Setaria italica
Seita.5G190300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24365378-24375377 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189119 5267 Panicoideae View MSA
124573695 5269 Grass View MSA
122047983 5273 Angiosperm View MSA
121345324 5274 Embryophyte View MSA
123425871 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.333        
cufflinks 4.655        
cufflinks 0.952        
cufflinks 0.476       Low
cufflinks 1.636        
cufflinks 3.452        
cufflinks 4.026        
cufflinks 6.677       High
cufflinks 8.532       High
cufflinks 2.369        
cufflinks 3.451        
cufflinks 1.081        
cufflinks 0.596       Low
cufflinks 1.469        
cufflinks 0.873        
cufflinks 4.548        
cufflinks 1.469        
cufflinks 2.366        
cufflinks 0.205       Low
cufflinks 1.124        

0 Strain