Gene : Seita.5G191200 S. italica v2.2
Defline:  (1 of 1) PTHR10791//PTHR10791:SF23 - RAG1-ACTIVATING PROTEIN 1 Genomic Order:  1912
Name:  ? Seita.5G191200 Secondary Identifier:  ? PAC:32681050
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G191200 0.5kb upstream 0.5kb upstream 3566 true scaffold_5: 24535396-24538961 Setaria italica
Seita.5G191200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24538462-24538961 Setaria italica
Seita.5G191200 0.5kb downstream 0.5kb downstream 3566 true scaffold_5: 24534896-24538461 Setaria italica
Seita.5G191200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24534896-24535395 Setaria italica
Seita.5G191200 1.0kb upstream 1.0kb upstream 4066 true scaffold_5: 24535396-24539461 Setaria italica
Seita.5G191200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24538462-24539461 Setaria italica
Seita.5G191200 1.0kb downstream 1.0kb downstream 4066 true scaffold_5: 24534396-24538461 Setaria italica
Seita.5G191200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24534396-24535395 Setaria italica
Seita.5G191200 2.0kb upstream 2.0kb upstream 5066 true scaffold_5: 24535396-24540461 Setaria italica
Seita.5G191200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24538462-24540461 Setaria italica
Seita.5G191200 2.0kb downstream 2.0kb downstream 5066 true scaffold_5: 24533396-24538461 Setaria italica
Seita.5G191200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24533396-24535395 Setaria italica
Seita.5G191200 5.0kb upstream 5.0kb upstream 8066 true scaffold_5: 24535396-24543461 Setaria italica
Seita.5G191200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24538462-24543461 Setaria italica
Seita.5G191200 5.0kb downstream 5.0kb downstream 8066 true scaffold_5: 24530396-24538461 Setaria italica
Seita.5G191200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24530396-24535395 Setaria italica
Seita.5G191200 10.0kb upstream 10.0kb upstream 13066 true scaffold_5: 24535396-24548461 Setaria italica
Seita.5G191200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24538462-24548461 Setaria italica
Seita.5G191200 10.0kb downstream 10.0kb downstream 13066 true scaffold_5: 24525396-24538461 Setaria italica
Seita.5G191200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24525396-24535395 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177535 5267 Panicoideae View MSA
124576748 5269 Grass View MSA
122048091 5273 Angiosperm View MSA
121310847 5274 Embryophyte View MSA
123348232 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.447        
cufflinks 4.761       Low
cufflinks 4.459       Low
cufflinks 7.071        
cufflinks 9.879        
cufflinks 5.52        
cufflinks 5.969        
cufflinks 13.709     High  
cufflinks 8.573        
cufflinks 11.653        
cufflinks 14.116     High  
cufflinks 32.368     High High
cufflinks 38.212     High High
cufflinks 3.951       Low
cufflinks 16.404     High  
cufflinks 5.71        
cufflinks 26.158     High High
cufflinks 18.819     High  
cufflinks 8.85        
cufflinks 25.377     High High

0 Strain