Gene : Seita.5G195600 S. italica v2.2
Defline:  (1 of 1) PTHR21198 - GLUTAMATE RACEMASE Genomic Order:  1956
Name:  ? Seita.5G195600 Secondary Identifier:  ? PAC:32683280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G195600 0.5kb upstream 0.5kb upstream 4597 true scaffold_5: 25182329-25186925 Setaria italica
Seita.5G195600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25182329-25182828 Setaria italica
Seita.5G195600 0.5kb downstream 0.5kb downstream 4597 true scaffold_5: 25182829-25187425 Setaria italica
Seita.5G195600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25186926-25187425 Setaria italica
Seita.5G195600 1.0kb upstream 1.0kb upstream 5097 true scaffold_5: 25181829-25186925 Setaria italica
Seita.5G195600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25181829-25182828 Setaria italica
Seita.5G195600 1.0kb downstream 1.0kb downstream 5097 true scaffold_5: 25182829-25187925 Setaria italica
Seita.5G195600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25186926-25187925 Setaria italica
Seita.5G195600 2.0kb upstream 2.0kb upstream 6097 true scaffold_5: 25180829-25186925 Setaria italica
Seita.5G195600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25180829-25182828 Setaria italica
Seita.5G195600 2.0kb downstream 2.0kb downstream 6097 true scaffold_5: 25182829-25188925 Setaria italica
Seita.5G195600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25186926-25188925 Setaria italica
Seita.5G195600 5.0kb upstream 5.0kb upstream 9097 true scaffold_5: 25177829-25186925 Setaria italica
Seita.5G195600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25177829-25182828 Setaria italica
Seita.5G195600 5.0kb downstream 5.0kb downstream 9097 true scaffold_5: 25182829-25191925 Setaria italica
Seita.5G195600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25186926-25191925 Setaria italica
Seita.5G195600 10.0kb upstream 10.0kb upstream 14097 true scaffold_5: 25172829-25186925 Setaria italica
Seita.5G195600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25172829-25182828 Setaria italica
Seita.5G195600 10.0kb downstream 10.0kb downstream 14097 true scaffold_5: 25182829-25196925 Setaria italica
Seita.5G195600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25186926-25196925 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186468 5267 Panicoideae View MSA
124571072 5269 Grass View MSA
122047895 5273 Angiosperm View MSA
121310810 5274 Embryophyte View MSA
123348207 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.068        
cufflinks 1.635        
cufflinks 1.324        
cufflinks 0.499        
cufflinks 0.916        
cufflinks 1.597        
cufflinks 2.504       High
cufflinks 2.45       High
cufflinks 1.841       High
cufflinks 0.605        
cufflinks 1.045        
cufflinks 0.26       Low
cufflinks 0.306       Low
cufflinks 2.559       High
cufflinks 0.541        
cufflinks 1.07        
cufflinks 0.37       Low
cufflinks 0.285       Low
cufflinks 0.92        
cufflinks 0.449        

0 Strain