Gene : Seita.5G197800 S. italica v2.2
Defline:  (1 of 1) PTHR12326 - PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN Genomic Order:  1978
Name:  ? Seita.5G197800 Secondary Identifier:  ? PAC:32683648
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G197800 0.5kb upstream 0.5kb upstream 4263 true scaffold_5: 25390301-25394563 Setaria italica
Seita.5G197800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25390301-25390800 Setaria italica
Seita.5G197800 0.5kb downstream 0.5kb downstream 4263 true scaffold_5: 25390801-25395063 Setaria italica
Seita.5G197800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25394564-25395063 Setaria italica
Seita.5G197800 1.0kb upstream 1.0kb upstream 4763 true scaffold_5: 25389801-25394563 Setaria italica
Seita.5G197800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25389801-25390800 Setaria italica
Seita.5G197800 1.0kb downstream 1.0kb downstream 4763 true scaffold_5: 25390801-25395563 Setaria italica
Seita.5G197800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25394564-25395563 Setaria italica
Seita.5G197800 2.0kb upstream 2.0kb upstream 5763 true scaffold_5: 25388801-25394563 Setaria italica
Seita.5G197800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25388801-25390800 Setaria italica
Seita.5G197800 2.0kb downstream 2.0kb downstream 5763 true scaffold_5: 25390801-25396563 Setaria italica
Seita.5G197800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25394564-25396563 Setaria italica
Seita.5G197800 5.0kb upstream 5.0kb upstream 8763 true scaffold_5: 25385801-25394563 Setaria italica
Seita.5G197800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25385801-25390800 Setaria italica
Seita.5G197800 5.0kb downstream 5.0kb downstream 8763 true scaffold_5: 25390801-25399563 Setaria italica
Seita.5G197800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25394564-25399563 Setaria italica
Seita.5G197800 10.0kb upstream 10.0kb upstream 13763 true scaffold_5: 25380801-25394563 Setaria italica
Seita.5G197800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25380801-25390800 Setaria italica
Seita.5G197800 10.0kb downstream 10.0kb downstream 13763 true scaffold_5: 25390801-25404563 Setaria italica
Seita.5G197800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25394564-25404563 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178343 5267 Panicoideae View MSA
124571706 5269 Grass View MSA
122042332 5273 Angiosperm View MSA
121350531 5274 Embryophyte View MSA
123381775 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.105        
cufflinks 8.911       High
cufflinks 5.462        
cufflinks 5.274        
cufflinks 4.68       Low
cufflinks 8.582       High
cufflinks 5.413        
cufflinks 6.319        
cufflinks 4.501       Low
cufflinks 5.777        
cufflinks 6.165        
cufflinks 6.903        
cufflinks 6.679        
cufflinks 4.519       Low
cufflinks 6.558        
cufflinks 6.081        
cufflinks 6.931        
cufflinks 5.795        
cufflinks 5.464        
cufflinks 5.952        

0 Strain