Gene : Seita.5G198200 S. italica v2.2
Defline:  (1 of 2) 1.14.19.4 - Delta(8)-fatty-acid desaturase / SLD Genomic Order:  1982
Name:  ? Seita.5G198200 Secondary Identifier:  ? PAC:32685012
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7601 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G198200 0.5kb upstream 0.5kb upstream 1913 true scaffold_5: 25488583-25490495 Setaria italica
Seita.5G198200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25489996-25490495 Setaria italica
Seita.5G198200 0.5kb downstream 0.5kb downstream 1913 true scaffold_5: 25488083-25489995 Setaria italica
Seita.5G198200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25488083-25488582 Setaria italica
Seita.5G198200 1.0kb upstream 1.0kb upstream 2413 true scaffold_5: 25488583-25490995 Setaria italica
Seita.5G198200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25489996-25490995 Setaria italica
Seita.5G198200 1.0kb downstream 1.0kb downstream 2413 true scaffold_5: 25487583-25489995 Setaria italica
Seita.5G198200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25487583-25488582 Setaria italica
Seita.5G198200 2.0kb upstream 2.0kb upstream 3413 true scaffold_5: 25488583-25491995 Setaria italica
Seita.5G198200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25489996-25491995 Setaria italica
Seita.5G198200 2.0kb downstream 2.0kb downstream 3413 true scaffold_5: 25486583-25489995 Setaria italica
Seita.5G198200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25486583-25488582 Setaria italica
Seita.5G198200 5.0kb upstream 5.0kb upstream 6413 true scaffold_5: 25488583-25494995 Setaria italica
Seita.5G198200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25489996-25494995 Setaria italica
Seita.5G198200 5.0kb downstream 5.0kb downstream 6413 true scaffold_5: 25483583-25489995 Setaria italica
Seita.5G198200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25483583-25488582 Setaria italica
Seita.5G198200 10.0kb upstream 10.0kb upstream 11413 true scaffold_5: 25488583-25499995 Setaria italica
Seita.5G198200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25489996-25499995 Setaria italica
Seita.5G198200 10.0kb downstream 10.0kb downstream 11413 true scaffold_5: 25478583-25489995 Setaria italica
Seita.5G198200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25478583-25488582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122047499 5273 Angiosperm View MSA
122192094 5267 Panicoideae View MSA
124466254 5269 Grass View MSA
121347259 5274 Embryophyte View MSA
123427370 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.073     Low  
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low Low
cufflinks 0.076     Low  
cufflinks 0.008     Low Low
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.8       High
cufflinks 0.667       High
cufflinks 0.047     Low  
cufflinks 0.093     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.121     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.189        

0 Strain