Gene : Seita.5G128900 S. italica v2.2
Defline:  (1 of 1) PTHR31791:SF10 - FRIGIDA-LIKE PROTEIN 1-RELATED Genomic Order:  1289
Name:  ? Seita.5G128900 Secondary Identifier:  ? PAC:32685431
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G128900 0.5kb upstream 0.5kb upstream 4141 true scaffold_5: 11043243-11047383 Setaria italica
Seita.5G128900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11046884-11047383 Setaria italica
Seita.5G128900 0.5kb downstream 0.5kb downstream 4141 true scaffold_5: 11042743-11046883 Setaria italica
Seita.5G128900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11042743-11043242 Setaria italica
Seita.5G128900 1.0kb upstream 1.0kb upstream 4641 true scaffold_5: 11043243-11047883 Setaria italica
Seita.5G128900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11046884-11047883 Setaria italica
Seita.5G128900 1.0kb downstream 1.0kb downstream 4641 true scaffold_5: 11042243-11046883 Setaria italica
Seita.5G128900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11042243-11043242 Setaria italica
Seita.5G128900 2.0kb upstream 2.0kb upstream 5641 true scaffold_5: 11043243-11048883 Setaria italica
Seita.5G128900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11046884-11048883 Setaria italica
Seita.5G128900 2.0kb downstream 2.0kb downstream 5641 true scaffold_5: 11041243-11046883 Setaria italica
Seita.5G128900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11041243-11043242 Setaria italica
Seita.5G128900 5.0kb upstream 5.0kb upstream 8641 true scaffold_5: 11043243-11051883 Setaria italica
Seita.5G128900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11046884-11051883 Setaria italica
Seita.5G128900 5.0kb downstream 5.0kb downstream 8641 true scaffold_5: 11038243-11046883 Setaria italica
Seita.5G128900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11038243-11043242 Setaria italica
Seita.5G128900 10.0kb upstream 10.0kb upstream 13641 true scaffold_5: 11043243-11056883 Setaria italica
Seita.5G128900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11046884-11056883 Setaria italica
Seita.5G128900 10.0kb downstream 10.0kb downstream 13641 true scaffold_5: 11033243-11046883 Setaria italica
Seita.5G128900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11033243-11043242 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182806 5267 Panicoideae View MSA
124578983 5269 Grass View MSA
122049727 5273 Angiosperm View MSA
121311561 5274 Embryophyte View MSA
123348841 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.687        
cufflinks 10.489        
cufflinks 6.891        
cufflinks 6.026        
cufflinks 6.239        
cufflinks 11.579       High
cufflinks 8.389        
cufflinks 7.236        
cufflinks 8.248        
cufflinks 5.193       Low
cufflinks 8.969        
cufflinks 10.618       High
cufflinks 5.089       Low
cufflinks 7.059        
cufflinks 10.902       High
cufflinks 5.652       Low
cufflinks 11.628       High
cufflinks 11.838     High High
cufflinks 5.694       Low
cufflinks 9.958        

0 Strain