Gene : Seita.5G131800 S. italica v2.2
Defline:  (1 of 1) KOG3170 - Conserved phosducin-like protein Genomic Order:  1318
Name:  ? Seita.5G131800 Secondary Identifier:  ? PAC:32685425
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G131800 0.5kb upstream 0.5kb upstream 3175 true scaffold_5: 11246210-11249384 Setaria italica
Seita.5G131800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11248885-11249384 Setaria italica
Seita.5G131800 0.5kb downstream 0.5kb downstream 3175 true scaffold_5: 11245710-11248884 Setaria italica
Seita.5G131800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11245710-11246209 Setaria italica
Seita.5G131800 1.0kb upstream 1.0kb upstream 3675 true scaffold_5: 11246210-11249884 Setaria italica
Seita.5G131800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11248885-11249884 Setaria italica
Seita.5G131800 1.0kb downstream 1.0kb downstream 3675 true scaffold_5: 11245210-11248884 Setaria italica
Seita.5G131800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11245210-11246209 Setaria italica
Seita.5G131800 2.0kb upstream 2.0kb upstream 4675 true scaffold_5: 11246210-11250884 Setaria italica
Seita.5G131800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11248885-11250884 Setaria italica
Seita.5G131800 2.0kb downstream 2.0kb downstream 4675 true scaffold_5: 11244210-11248884 Setaria italica
Seita.5G131800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11244210-11246209 Setaria italica
Seita.5G131800 5.0kb upstream 5.0kb upstream 7675 true scaffold_5: 11246210-11253884 Setaria italica
Seita.5G131800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11248885-11253884 Setaria italica
Seita.5G131800 5.0kb downstream 5.0kb downstream 7675 true scaffold_5: 11241210-11248884 Setaria italica
Seita.5G131800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11241210-11246209 Setaria italica
Seita.5G131800 10.0kb upstream 10.0kb upstream 12675 true scaffold_5: 11246210-11258884 Setaria italica
Seita.5G131800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11248885-11258884 Setaria italica
Seita.5G131800 10.0kb downstream 10.0kb downstream 12675 true scaffold_5: 11236210-11248884 Setaria italica
Seita.5G131800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11236210-11246209 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199613 5267 Panicoideae View MSA
124573104 5269 Grass View MSA
122042488 5273 Angiosperm View MSA
121344718 5274 Embryophyte View MSA
123424986 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.612     High High
cufflinks 14.21     High  
cufflinks 12.328     High  
cufflinks 16.018     High  
cufflinks 15.466     High  
cufflinks 14.811     High  
cufflinks 9.865       Low
cufflinks 15.497     High  
cufflinks 10.299       Low
cufflinks 14.33        
cufflinks 16.343     High  
cufflinks 20.781     High High
cufflinks 17.497     High  
cufflinks 12.896        
cufflinks 15.049     High  
cufflinks 13.87     High  
cufflinks 23.701     High High
cufflinks 23.375     High High
cufflinks 13.433     High  
cufflinks 17.7     High  

0 Strain