Gene : Seita.5G131900 S. italica v2.2
Defline:  (1 of 3) PTHR13711//PTHR13711:SF199 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN Genomic Order:  1319
Name:  ? Seita.5G131900 Secondary Identifier:  ? PAC:32685539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G131900 0.5kb upstream 0.5kb upstream 7179 true scaffold_5: 11248556-11255734 Setaria italica
Seita.5G131900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11248556-11249055 Setaria italica
Seita.5G131900 0.5kb downstream 0.5kb downstream 7179 true scaffold_5: 11249056-11256234 Setaria italica
Seita.5G131900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11255735-11256234 Setaria italica
Seita.5G131900 1.0kb upstream 1.0kb upstream 7679 true scaffold_5: 11248056-11255734 Setaria italica
Seita.5G131900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11248056-11249055 Setaria italica
Seita.5G131900 1.0kb downstream 1.0kb downstream 7679 true scaffold_5: 11249056-11256734 Setaria italica
Seita.5G131900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11255735-11256734 Setaria italica
Seita.5G131900 2.0kb upstream 2.0kb upstream 8679 true scaffold_5: 11247056-11255734 Setaria italica
Seita.5G131900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11247056-11249055 Setaria italica
Seita.5G131900 2.0kb downstream 2.0kb downstream 8679 true scaffold_5: 11249056-11257734 Setaria italica
Seita.5G131900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11255735-11257734 Setaria italica
Seita.5G131900 5.0kb upstream 5.0kb upstream 11679 true scaffold_5: 11244056-11255734 Setaria italica
Seita.5G131900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11244056-11249055 Setaria italica
Seita.5G131900 5.0kb downstream 5.0kb downstream 11679 true scaffold_5: 11249056-11260734 Setaria italica
Seita.5G131900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11255735-11260734 Setaria italica
Seita.5G131900 10.0kb upstream 10.0kb upstream 16679 true scaffold_5: 11239056-11255734 Setaria italica
Seita.5G131900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11239056-11249055 Setaria italica
Seita.5G131900 10.0kb downstream 10.0kb downstream 16679 true scaffold_5: 11249056-11265734 Setaria italica
Seita.5G131900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11255735-11265734 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182910 5267 Panicoideae View MSA
124586936 5269 Grass View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.009     High High
cufflinks 33.256     High  
cufflinks 28.904     High  
cufflinks 32.731     High  
cufflinks 25.165     High  
cufflinks 37.556     High  
cufflinks 27.457     High  
cufflinks 23.777     High  
cufflinks 22.864     High  
cufflinks 14.877       Low
cufflinks 32.961     High  
cufflinks 44.351     High High
cufflinks 30.656     High  
cufflinks 21.059     High Low
cufflinks 30.183     High  
cufflinks 39.128     High  
cufflinks 35.953     High  
cufflinks 63.431     High High
cufflinks 24.03     High  
cufflinks 31.564     High  

0 Strain