Gene : Seita.5G133300 S. italica v2.2
Defline:  (1 of 2) PTHR24356:SF206 - AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN Genomic Order:  1333
Name:  ? Seita.5G133300 Secondary Identifier:  ? PAC:32684587
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G133300 0.5kb upstream 0.5kb upstream 7109 true scaffold_5: 11497719-11504827 Setaria italica
Seita.5G133300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11504328-11504827 Setaria italica
Seita.5G133300 0.5kb downstream 0.5kb downstream 7109 true scaffold_5: 11497219-11504327 Setaria italica
Seita.5G133300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11497219-11497718 Setaria italica
Seita.5G133300 1.0kb upstream 1.0kb upstream 7609 true scaffold_5: 11497719-11505327 Setaria italica
Seita.5G133300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11504328-11505327 Setaria italica
Seita.5G133300 1.0kb downstream 1.0kb downstream 7609 true scaffold_5: 11496719-11504327 Setaria italica
Seita.5G133300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11496719-11497718 Setaria italica
Seita.5G133300 2.0kb upstream 2.0kb upstream 8609 true scaffold_5: 11497719-11506327 Setaria italica
Seita.5G133300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11504328-11506327 Setaria italica
Seita.5G133300 2.0kb downstream 2.0kb downstream 8609 true scaffold_5: 11495719-11504327 Setaria italica
Seita.5G133300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11495719-11497718 Setaria italica
Seita.5G133300 5.0kb upstream 5.0kb upstream 11609 true scaffold_5: 11497719-11509327 Setaria italica
Seita.5G133300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11504328-11509327 Setaria italica
Seita.5G133300 5.0kb downstream 5.0kb downstream 11609 true scaffold_5: 11492719-11504327 Setaria italica
Seita.5G133300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11492719-11497718 Setaria italica
Seita.5G133300 10.0kb upstream 10.0kb upstream 16609 true scaffold_5: 11497719-11514327 Setaria italica
Seita.5G133300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11504328-11514327 Setaria italica
Seita.5G133300 10.0kb downstream 10.0kb downstream 16609 true scaffold_5: 11487719-11504327 Setaria italica
Seita.5G133300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11487719-11497718 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041161 5273 Angiosperm View MSA
122181014 5267 Panicoideae View MSA
124583296 5269 Grass View MSA
121348610 5274 Embryophyte View MSA
123428649 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.37     High  
cufflinks 17.453     High  
cufflinks 6.559       Low
cufflinks 5.889       Low
cufflinks 6.311       Low
cufflinks 17.771     High  
cufflinks 11.082        
cufflinks 11.629        
cufflinks 10.792        
cufflinks 13.255        
cufflinks 21.025     High High
cufflinks 14.043     High  
cufflinks 14.437     High  
cufflinks 5.879       Low
cufflinks 22.278     High High
cufflinks 7.462        
cufflinks 17.53     High  
cufflinks 6.115       Low
cufflinks 6.83       Low
cufflinks 24.979     High High

0 Strain