Gene : Seita.5G132900 S. italica v2.2
Defline:  (1 of 8) PF13426 - PAS domain (PAS_9) Genomic Order:  1329
Name:  ? Seita.5G132900 Secondary Identifier:  ? PAC:32683093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G132900 0.5kb upstream 0.5kb upstream 4525 true scaffold_5: 11392122-11396646 Setaria italica
Seita.5G132900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11396147-11396646 Setaria italica
Seita.5G132900 0.5kb downstream 0.5kb downstream 4525 true scaffold_5: 11391622-11396146 Setaria italica
Seita.5G132900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11391622-11392121 Setaria italica
Seita.5G132900 1.0kb upstream 1.0kb upstream 5025 true scaffold_5: 11392122-11397146 Setaria italica
Seita.5G132900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11396147-11397146 Setaria italica
Seita.5G132900 1.0kb downstream 1.0kb downstream 5025 true scaffold_5: 11391122-11396146 Setaria italica
Seita.5G132900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11391122-11392121 Setaria italica
Seita.5G132900 2.0kb upstream 2.0kb upstream 6025 true scaffold_5: 11392122-11398146 Setaria italica
Seita.5G132900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11396147-11398146 Setaria italica
Seita.5G132900 2.0kb downstream 2.0kb downstream 6025 true scaffold_5: 11390122-11396146 Setaria italica
Seita.5G132900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11390122-11392121 Setaria italica
Seita.5G132900 5.0kb upstream 5.0kb upstream 9025 true scaffold_5: 11392122-11401146 Setaria italica
Seita.5G132900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11396147-11401146 Setaria italica
Seita.5G132900 5.0kb downstream 5.0kb downstream 9025 true scaffold_5: 11387122-11396146 Setaria italica
Seita.5G132900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11387122-11392121 Setaria italica
Seita.5G132900 10.0kb upstream 10.0kb upstream 14025 true scaffold_5: 11392122-11406146 Setaria italica
Seita.5G132900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11396147-11406146 Setaria italica
Seita.5G132900 10.0kb downstream 10.0kb downstream 14025 true scaffold_5: 11382122-11396146 Setaria italica
Seita.5G132900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11382122-11392121 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179675 5267 Panicoideae View MSA
124576216 5269 Grass View MSA
122045856 5273 Angiosperm View MSA
121348460 5274 Embryophyte View MSA
123424929 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.81        
cufflinks 1.059       Low
cufflinks 6.502       High
cufflinks 8.148       High
cufflinks 5.926        
cufflinks 1.098       Low
cufflinks 1.533        
cufflinks 6.103        
cufflinks 3.369        
cufflinks 1.991        
cufflinks 1.297       Low
cufflinks 4.31        
cufflinks 3.387        
cufflinks 3.096        
cufflinks 1.288       Low
cufflinks 5.322        
cufflinks 4.311        
cufflinks 9.79       High
cufflinks 5.433        
cufflinks 1.544        

0 Strain