Gene : Seita.5G135400 S. italica v2.2
Defline:  (1 of 1) PTHR11851//PTHR11851:SF138 - METALLOPROTEASE Genomic Order:  1354
Name:  ? Seita.5G135400 Secondary Identifier:  ? PAC:32685677
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G135400 0.5kb upstream 0.5kb upstream 6166 true scaffold_5: 11806901-11813066 Setaria italica
Seita.5G135400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11806901-11807400 Setaria italica
Seita.5G135400 0.5kb downstream 0.5kb downstream 6166 true scaffold_5: 11807401-11813566 Setaria italica
Seita.5G135400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11813067-11813566 Setaria italica
Seita.5G135400 1.0kb upstream 1.0kb upstream 6666 true scaffold_5: 11806401-11813066 Setaria italica
Seita.5G135400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11806401-11807400 Setaria italica
Seita.5G135400 1.0kb downstream 1.0kb downstream 6666 true scaffold_5: 11807401-11814066 Setaria italica
Seita.5G135400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11813067-11814066 Setaria italica
Seita.5G135400 2.0kb upstream 2.0kb upstream 7666 true scaffold_5: 11805401-11813066 Setaria italica
Seita.5G135400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11805401-11807400 Setaria italica
Seita.5G135400 2.0kb downstream 2.0kb downstream 7666 true scaffold_5: 11807401-11815066 Setaria italica
Seita.5G135400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11813067-11815066 Setaria italica
Seita.5G135400 5.0kb upstream 5.0kb upstream 10666 true scaffold_5: 11802401-11813066 Setaria italica
Seita.5G135400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11802401-11807400 Setaria italica
Seita.5G135400 5.0kb downstream 5.0kb downstream 10666 true scaffold_5: 11807401-11818066 Setaria italica
Seita.5G135400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11813067-11818066 Setaria italica
Seita.5G135400 10.0kb upstream 10.0kb upstream 15666 true scaffold_5: 11797401-11813066 Setaria italica
Seita.5G135400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11797401-11807400 Setaria italica
Seita.5G135400 10.0kb downstream 10.0kb downstream 15666 true scaffold_5: 11807401-11823066 Setaria italica
Seita.5G135400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11813067-11823066 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122189080 5267 Panicoideae View MSA
124574686 5269 Grass View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.827     High  
cufflinks 31.704     High  
cufflinks 25.736     High  
cufflinks 24.446     High  
cufflinks 27.593     High  
cufflinks 30.394     High  
cufflinks 25.318     High  
cufflinks 40.131     High  
cufflinks 36.107     High  
cufflinks 40.571     High  
cufflinks 43.441     High  
cufflinks 45.009     High  
cufflinks 50.928     High High
cufflinks 23.875     High  
cufflinks 55.954     High High
cufflinks 17.045     High Low
cufflinks 58.712     High High
cufflinks 11.393     High Low
cufflinks 27.475     High  
cufflinks 63.244     High High

0 Strain