Gene : Seita.5G136000 S. italica v2.2
Genomic Order:  1360 Name:  ? Seita.5G136000
Secondary Identifier:  ? PAC:32681756
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G136000 0.5kb upstream 0.5kb upstream 5250 true scaffold_5: 11891832-11897081 Setaria italica
Seita.5G136000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11891832-11892331 Setaria italica
Seita.5G136000 0.5kb downstream 0.5kb downstream 5250 true scaffold_5: 11892332-11897581 Setaria italica
Seita.5G136000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11897082-11897581 Setaria italica
Seita.5G136000 1.0kb upstream 1.0kb upstream 5750 true scaffold_5: 11891332-11897081 Setaria italica
Seita.5G136000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11891332-11892331 Setaria italica
Seita.5G136000 1.0kb downstream 1.0kb downstream 5750 true scaffold_5: 11892332-11898081 Setaria italica
Seita.5G136000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11897082-11898081 Setaria italica
Seita.5G136000 2.0kb upstream 2.0kb upstream 6750 true scaffold_5: 11890332-11897081 Setaria italica
Seita.5G136000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11890332-11892331 Setaria italica
Seita.5G136000 2.0kb downstream 2.0kb downstream 6750 true scaffold_5: 11892332-11899081 Setaria italica
Seita.5G136000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11897082-11899081 Setaria italica
Seita.5G136000 5.0kb upstream 5.0kb upstream 9750 true scaffold_5: 11887332-11897081 Setaria italica
Seita.5G136000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11887332-11892331 Setaria italica
Seita.5G136000 5.0kb downstream 5.0kb downstream 9750 true scaffold_5: 11892332-11902081 Setaria italica
Seita.5G136000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11897082-11902081 Setaria italica
Seita.5G136000 10.0kb upstream 10.0kb upstream 14750 true scaffold_5: 11882332-11897081 Setaria italica
Seita.5G136000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11882332-11892331 Setaria italica
Seita.5G136000 10.0kb downstream 10.0kb downstream 14750 true scaffold_5: 11892332-11907081 Setaria italica
Seita.5G136000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11897082-11907081 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187505 5267 Panicoideae View MSA
124589321 5269 Grass View MSA
122047772 5273 Angiosperm View MSA
121310791 5274 Embryophyte View MSA
123348191 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.724     High High
cufflinks 14.896     High High
cufflinks 6.506       Low
cufflinks 7.461        
cufflinks 8.402        
cufflinks 18.999     High High
cufflinks 10.169        
cufflinks 10.8        
cufflinks 9.637        
cufflinks 7.664        
cufflinks 11.634        
cufflinks 13.572        
cufflinks 8.796        
cufflinks 4.327       Low
cufflinks 8.866        
cufflinks 10.765        
cufflinks 13.835        
cufflinks 12.721     High  
cufflinks 5.858       Low
cufflinks 10.412        

0 Strain