Gene : Seita.5G139100 S. italica v2.2
Defline:  (1 of 1) 3.6.1.9 - Nucleotide diphosphatase / Nucleotide pyrophosphatase Genomic Order:  1391
Name:  ? Seita.5G139100 Secondary Identifier:  ? PAC:32686517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G139100 0.5kb upstream 0.5kb upstream 8045 true scaffold_5: 12139367-12147411 Setaria italica
Seita.5G139100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12139367-12139866 Setaria italica
Seita.5G139100 0.5kb downstream 0.5kb downstream 8045 true scaffold_5: 12139867-12147911 Setaria italica
Seita.5G139100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12147412-12147911 Setaria italica
Seita.5G139100 1.0kb upstream 1.0kb upstream 8545 true scaffold_5: 12138867-12147411 Setaria italica
Seita.5G139100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12138867-12139866 Setaria italica
Seita.5G139100 1.0kb downstream 1.0kb downstream 8545 true scaffold_5: 12139867-12148411 Setaria italica
Seita.5G139100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12147412-12148411 Setaria italica
Seita.5G139100 2.0kb upstream 2.0kb upstream 9545 true scaffold_5: 12137867-12147411 Setaria italica
Seita.5G139100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12137867-12139866 Setaria italica
Seita.5G139100 2.0kb downstream 2.0kb downstream 9545 true scaffold_5: 12139867-12149411 Setaria italica
Seita.5G139100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12147412-12149411 Setaria italica
Seita.5G139100 5.0kb upstream 5.0kb upstream 12545 true scaffold_5: 12134867-12147411 Setaria italica
Seita.5G139100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12134867-12139866 Setaria italica
Seita.5G139100 5.0kb downstream 5.0kb downstream 12545 true scaffold_5: 12139867-12152411 Setaria italica
Seita.5G139100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12147412-12152411 Setaria italica
Seita.5G139100 10.0kb upstream 10.0kb upstream 17545 true scaffold_5: 12129867-12147411 Setaria italica
Seita.5G139100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12129867-12139866 Setaria italica
Seita.5G139100 10.0kb downstream 10.0kb downstream 17545 true scaffold_5: 12139867-12157411 Setaria italica
Seita.5G139100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12147412-12157411 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183767 5267 Panicoideae View MSA
124578110 5269 Grass View MSA
122045271 5273 Angiosperm View MSA
121350623 5274 Embryophyte View MSA
123425338 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.886        
cufflinks 5.272       High
cufflinks 1.401       Low
cufflinks 1.121       Low
cufflinks 1.991        
cufflinks 4.041        
cufflinks 3.742        
cufflinks 2.707        
cufflinks 2.917        
cufflinks 4.498       High
cufflinks 5.066       High
cufflinks 2.441        
cufflinks 1.719        
cufflinks 1.434       Low
cufflinks 3.853        
cufflinks 2.478        
cufflinks 3.371        
cufflinks 1.755        
cufflinks 1.342       Low
cufflinks 4.312        

0 Strain