Gene : Seita.5G144500 S. italica v2.2
Defline:  (1 of 2) PF10189 - Conserved protein (DUF2356) (DUF2356) Genomic Order:  1445
Name:  ? Seita.5G144500 Secondary Identifier:  ? PAC:32680748
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G144500 0.5kb upstream 0.5kb upstream 1726 true scaffold_5: 12859828-12861553 Setaria italica
Seita.5G144500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12861054-12861553 Setaria italica
Seita.5G144500 0.5kb downstream 0.5kb downstream 1726 true scaffold_5: 12859328-12861053 Setaria italica
Seita.5G144500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12859328-12859827 Setaria italica
Seita.5G144500 1.0kb upstream 1.0kb upstream 2226 true scaffold_5: 12859828-12862053 Setaria italica
Seita.5G144500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12861054-12862053 Setaria italica
Seita.5G144500 1.0kb downstream 1.0kb downstream 2226 true scaffold_5: 12858828-12861053 Setaria italica
Seita.5G144500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12858828-12859827 Setaria italica
Seita.5G144500 2.0kb upstream 2.0kb upstream 3226 true scaffold_5: 12859828-12863053 Setaria italica
Seita.5G144500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12861054-12863053 Setaria italica
Seita.5G144500 2.0kb downstream 2.0kb downstream 3226 true scaffold_5: 12857828-12861053 Setaria italica
Seita.5G144500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12857828-12859827 Setaria italica
Seita.5G144500 5.0kb upstream 5.0kb upstream 6226 true scaffold_5: 12859828-12866053 Setaria italica
Seita.5G144500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12861054-12866053 Setaria italica
Seita.5G144500 5.0kb downstream 5.0kb downstream 6226 true scaffold_5: 12854828-12861053 Setaria italica
Seita.5G144500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12854828-12859827 Setaria italica
Seita.5G144500 10.0kb upstream 10.0kb upstream 11226 true scaffold_5: 12859828-12871053 Setaria italica
Seita.5G144500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12861054-12871053 Setaria italica
Seita.5G144500 10.0kb downstream 10.0kb downstream 11226 true scaffold_5: 12849828-12861053 Setaria italica
Seita.5G144500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12849828-12859827 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026317 5273 Angiosperm View MSA
122189342 5267 Panicoideae View MSA
124581942 5269 Grass View MSA
121296275 5274 Embryophyte View MSA
123334469 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.399        
cufflinks 2.163       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.066       High
cufflinks 0.12        
cufflinks 0.129        
cufflinks 0.034     Low Low
cufflinks 0.963       High
cufflinks 0.669        
cufflinks 0.254        
cufflinks 0.08     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.227        
cufflinks 0.082     Low  
cufflinks 0.153        
cufflinks 0.046     Low  
cufflinks 0.016     Low Low
cufflinks 0.267        

0 Strain