Gene : Seita.5G146200 S. italica v2.2
Defline:  (1 of 2) 2.3.2.15 - Glutathione gamma-glutamylcysteinyltransferase / Phytochelatin synthase Genomic Order:  1462
Name:  ? Seita.5G146200 Secondary Identifier:  ? PAC:32681983
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6745 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G146200 0.5kb upstream 0.5kb upstream 4036 true scaffold_5: 12964224-12968259 Setaria italica
Seita.5G146200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12967760-12968259 Setaria italica
Seita.5G146200 0.5kb downstream 0.5kb downstream 4036 true scaffold_5: 12963724-12967759 Setaria italica
Seita.5G146200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12963724-12964223 Setaria italica
Seita.5G146200 1.0kb upstream 1.0kb upstream 4536 true scaffold_5: 12964224-12968759 Setaria italica
Seita.5G146200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12967760-12968759 Setaria italica
Seita.5G146200 1.0kb downstream 1.0kb downstream 4536 true scaffold_5: 12963224-12967759 Setaria italica
Seita.5G146200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12963224-12964223 Setaria italica
Seita.5G146200 2.0kb upstream 2.0kb upstream 5536 true scaffold_5: 12964224-12969759 Setaria italica
Seita.5G146200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12967760-12969759 Setaria italica
Seita.5G146200 2.0kb downstream 2.0kb downstream 5536 true scaffold_5: 12962224-12967759 Setaria italica
Seita.5G146200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12962224-12964223 Setaria italica
Seita.5G146200 5.0kb upstream 5.0kb upstream 8536 true scaffold_5: 12964224-12972759 Setaria italica
Seita.5G146200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12967760-12972759 Setaria italica
Seita.5G146200 5.0kb downstream 5.0kb downstream 8536 true scaffold_5: 12959224-12967759 Setaria italica
Seita.5G146200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12959224-12964223 Setaria italica
Seita.5G146200 10.0kb upstream 10.0kb upstream 13536 true scaffold_5: 12964224-12977759 Setaria italica
Seita.5G146200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12967760-12977759 Setaria italica
Seita.5G146200 10.0kb downstream 10.0kb downstream 13536 true scaffold_5: 12954224-12967759 Setaria italica
Seita.5G146200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12954224-12964223 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183759 5267 Panicoideae View MSA
124572349 5269 Grass View MSA
122042106 5273 Angiosperm View MSA
123429015 5275 Viridiplantae View MSA
121309923 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.602        
cufflinks 8.806        
cufflinks 5.193       Low
cufflinks 5.21       Low
cufflinks 5.618       Low
cufflinks 8.707        
cufflinks 10.582       High
cufflinks 7.985        
cufflinks 6.926        
cufflinks 5.278       Low
cufflinks 6.095        
cufflinks 9.616       High
cufflinks 6.626        
cufflinks 8.351        
cufflinks 9.702       High
cufflinks 8.691        
cufflinks 8.912        
cufflinks 7.672        
cufflinks 7.289        
cufflinks 7.762        

0 Strain