Gene : Seita.5G146100 S. italica v2.2
Defline:  (1 of 2) 2.3.2.15 - Glutathione gamma-glutamylcysteinyltransferase / Phytochelatin synthase Genomic Order:  1461
Name:  ? Seita.5G146100 Secondary Identifier:  ? PAC:32683420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6745 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G146100 0.5kb upstream 0.5kb upstream 5250 true scaffold_5: 12957074-12962323 Setaria italica
Seita.5G146100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12961824-12962323 Setaria italica
Seita.5G146100 0.5kb downstream 0.5kb downstream 5250 true scaffold_5: 12956574-12961823 Setaria italica
Seita.5G146100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12956574-12957073 Setaria italica
Seita.5G146100 1.0kb upstream 1.0kb upstream 5750 true scaffold_5: 12957074-12962823 Setaria italica
Seita.5G146100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12961824-12962823 Setaria italica
Seita.5G146100 1.0kb downstream 1.0kb downstream 5750 true scaffold_5: 12956074-12961823 Setaria italica
Seita.5G146100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12956074-12957073 Setaria italica
Seita.5G146100 2.0kb upstream 2.0kb upstream 6750 true scaffold_5: 12957074-12963823 Setaria italica
Seita.5G146100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12961824-12963823 Setaria italica
Seita.5G146100 2.0kb downstream 2.0kb downstream 6750 true scaffold_5: 12955074-12961823 Setaria italica
Seita.5G146100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12955074-12957073 Setaria italica
Seita.5G146100 5.0kb upstream 5.0kb upstream 9750 true scaffold_5: 12957074-12966823 Setaria italica
Seita.5G146100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12961824-12966823 Setaria italica
Seita.5G146100 5.0kb downstream 5.0kb downstream 9750 true scaffold_5: 12952074-12961823 Setaria italica
Seita.5G146100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12952074-12957073 Setaria italica
Seita.5G146100 10.0kb upstream 10.0kb upstream 14750 true scaffold_5: 12957074-12971823 Setaria italica
Seita.5G146100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12961824-12971823 Setaria italica
Seita.5G146100 10.0kb downstream 10.0kb downstream 14750 true scaffold_5: 12947074-12961823 Setaria italica
Seita.5G146100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12947074-12957073 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199389 5267 Panicoideae View MSA
124467949 5269 Grass View MSA
122042106 5273 Angiosperm View MSA
123429015 5275 Viridiplantae View MSA
121309923 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.018        
cufflinks 0.977       Low
cufflinks 3.032        
cufflinks 2.449        
cufflinks 1.628        
cufflinks 0.836       Low
cufflinks 4.171       High
cufflinks 2.742        
cufflinks 1.66        
cufflinks 2.272        
cufflinks 1.691        
cufflinks 1.715        
cufflinks 1.162       Low
cufflinks 4.339       High
cufflinks 2.177        
cufflinks 3.49       High
cufflinks 1.522        
cufflinks 1.955        
cufflinks 3.382       High
cufflinks 1.828        

0 Strain