Gene : Seita.5G152200 S. italica v2.2
Defline:  (1 of 1) 5.4.2.3 - Phosphoacetylglucosamine mutase / N-acetylglucosamine-phosphate mutase Genomic Order:  1522
Name:  ? Seita.5G152200 Secondary Identifier:  ? PAC:32683585
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica UDPNACETYLGALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G152200 0.5kb upstream 0.5kb upstream 3898 true scaffold_5: 13569028-13572925 Setaria italica
Seita.5G152200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13572426-13572925 Setaria italica
Seita.5G152200 0.5kb downstream 0.5kb downstream 3898 true scaffold_5: 13568528-13572425 Setaria italica
Seita.5G152200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13568528-13569027 Setaria italica
Seita.5G152200 1.0kb upstream 1.0kb upstream 4398 true scaffold_5: 13569028-13573425 Setaria italica
Seita.5G152200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13572426-13573425 Setaria italica
Seita.5G152200 1.0kb downstream 1.0kb downstream 4398 true scaffold_5: 13568028-13572425 Setaria italica
Seita.5G152200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13568028-13569027 Setaria italica
Seita.5G152200 2.0kb upstream 2.0kb upstream 5398 true scaffold_5: 13569028-13574425 Setaria italica
Seita.5G152200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13572426-13574425 Setaria italica
Seita.5G152200 2.0kb downstream 2.0kb downstream 5398 true scaffold_5: 13567028-13572425 Setaria italica
Seita.5G152200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13567028-13569027 Setaria italica
Seita.5G152200 5.0kb upstream 5.0kb upstream 8398 true scaffold_5: 13569028-13577425 Setaria italica
Seita.5G152200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13572426-13577425 Setaria italica
Seita.5G152200 5.0kb downstream 5.0kb downstream 8398 true scaffold_5: 13564028-13572425 Setaria italica
Seita.5G152200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13564028-13569027 Setaria italica
Seita.5G152200 10.0kb upstream 10.0kb upstream 13398 true scaffold_5: 13569028-13582425 Setaria italica
Seita.5G152200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13572426-13582425 Setaria italica
Seita.5G152200 10.0kb downstream 10.0kb downstream 13398 true scaffold_5: 13559028-13572425 Setaria italica
Seita.5G152200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13559028-13569027 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181003 5267 Panicoideae View MSA
124577327 5269 Grass View MSA
122047489 5273 Angiosperm View MSA
121347673 5274 Embryophyte View MSA
123424967 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.929        
cufflinks 9.839        
cufflinks 8.024        
cufflinks 7.941        
cufflinks 7.57        
cufflinks 8.867        
cufflinks 10.208        
cufflinks 8.329        
cufflinks 8.155        
cufflinks 8.001        
cufflinks 10.773        
cufflinks 17.127     High High
cufflinks 11.077        
cufflinks 5.884       Low
cufflinks 15.964     High High
cufflinks 7.484        
cufflinks 16.68     High High
cufflinks 6.464       Low
cufflinks 5.591       Low
cufflinks 20.13     High High

0 Strain