Gene : Seita.5G156200 S. italica v2.2
Defline:  (1 of 1) PTHR33824:SF3 - POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN-RELATED Genomic Order:  1562
Name:  ? Seita.5G156200 Secondary Identifier:  ? PAC:32682222
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G156200 0.5kb upstream 0.5kb upstream 3292 true scaffold_5: 14118518-14121809 Setaria italica
Seita.5G156200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 14118518-14119017 Setaria italica
Seita.5G156200 0.5kb downstream 0.5kb downstream 3292 true scaffold_5: 14119018-14122309 Setaria italica
Seita.5G156200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 14121810-14122309 Setaria italica
Seita.5G156200 1.0kb upstream 1.0kb upstream 3792 true scaffold_5: 14118018-14121809 Setaria italica
Seita.5G156200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 14118018-14119017 Setaria italica
Seita.5G156200 1.0kb downstream 1.0kb downstream 3792 true scaffold_5: 14119018-14122809 Setaria italica
Seita.5G156200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 14121810-14122809 Setaria italica
Seita.5G156200 2.0kb upstream 2.0kb upstream 4792 true scaffold_5: 14117018-14121809 Setaria italica
Seita.5G156200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 14117018-14119017 Setaria italica
Seita.5G156200 2.0kb downstream 2.0kb downstream 4792 true scaffold_5: 14119018-14123809 Setaria italica
Seita.5G156200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 14121810-14123809 Setaria italica
Seita.5G156200 5.0kb upstream 5.0kb upstream 7792 true scaffold_5: 14114018-14121809 Setaria italica
Seita.5G156200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 14114018-14119017 Setaria italica
Seita.5G156200 5.0kb downstream 5.0kb downstream 7792 true scaffold_5: 14119018-14126809 Setaria italica
Seita.5G156200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 14121810-14126809 Setaria italica
Seita.5G156200 10.0kb upstream 10.0kb upstream 12792 true scaffold_5: 14109018-14121809 Setaria italica
Seita.5G156200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 14109018-14119017 Setaria italica
Seita.5G156200 10.0kb downstream 10.0kb downstream 12792 true scaffold_5: 14119018-14131809 Setaria italica
Seita.5G156200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 14121810-14131809 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191877 5267 Panicoideae View MSA
124578561 5269 Grass View MSA
122046905 5273 Angiosperm View MSA
121345017 5274 Embryophyte View MSA
123427878 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.321        
cufflinks 4.393        
cufflinks 2.898        
cufflinks 3.939        
cufflinks 4.776        
cufflinks 3.743        
cufflinks 6.38       High
cufflinks 9.407       High
cufflinks 6.526       High
cufflinks 3.053        
cufflinks 3.593        
cufflinks 2.002       Low
cufflinks 3.946        
cufflinks 3.305        
cufflinks 2.967        
cufflinks 7.225       High
cufflinks 2.838        
cufflinks 2.221       Low
cufflinks 9.238       High
cufflinks 3.579        

0 Strain