Gene : Seita.5G156100 S. italica v2.2
Defline:  (1 of 1) PF07572 - Bucentaur or craniofacial development (BCNT) Genomic Order:  1561
Name:  ? Seita.5G156100 Secondary Identifier:  ? PAC:32682310
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G156100 0.5kb upstream 0.5kb upstream 3887 true scaffold_5: 14114747-14118633 Setaria italica
Seita.5G156100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 14114747-14115246 Setaria italica
Seita.5G156100 0.5kb downstream 0.5kb downstream 3887 true scaffold_5: 14115247-14119133 Setaria italica
Seita.5G156100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 14118634-14119133 Setaria italica
Seita.5G156100 1.0kb upstream 1.0kb upstream 4387 true scaffold_5: 14114247-14118633 Setaria italica
Seita.5G156100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 14114247-14115246 Setaria italica
Seita.5G156100 1.0kb downstream 1.0kb downstream 4387 true scaffold_5: 14115247-14119633 Setaria italica
Seita.5G156100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 14118634-14119633 Setaria italica
Seita.5G156100 2.0kb upstream 2.0kb upstream 5387 true scaffold_5: 14113247-14118633 Setaria italica
Seita.5G156100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 14113247-14115246 Setaria italica
Seita.5G156100 2.0kb downstream 2.0kb downstream 5387 true scaffold_5: 14115247-14120633 Setaria italica
Seita.5G156100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 14118634-14120633 Setaria italica
Seita.5G156100 5.0kb upstream 5.0kb upstream 8387 true scaffold_5: 14110247-14118633 Setaria italica
Seita.5G156100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 14110247-14115246 Setaria italica
Seita.5G156100 5.0kb downstream 5.0kb downstream 8387 true scaffold_5: 14115247-14123633 Setaria italica
Seita.5G156100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 14118634-14123633 Setaria italica
Seita.5G156100 10.0kb upstream 10.0kb upstream 13387 true scaffold_5: 14105247-14118633 Setaria italica
Seita.5G156100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 14105247-14115246 Setaria italica
Seita.5G156100 10.0kb downstream 10.0kb downstream 13387 true scaffold_5: 14115247-14128633 Setaria italica
Seita.5G156100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 14118634-14128633 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185415 5267 Panicoideae View MSA
124578392 5269 Grass View MSA
122044103 5273 Angiosperm View MSA
121343963 5274 Embryophyte View MSA
123425140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.193        
cufflinks 4.984        
cufflinks 3.448       Low
cufflinks 5.575        
cufflinks 3.753       Low
cufflinks 5.259        
cufflinks 3.649       Low
cufflinks 7.883       High
cufflinks 3.344       Low
cufflinks 6.208        
cufflinks 5.116        
cufflinks 6.869        
cufflinks 5.457        
cufflinks 3.83        
cufflinks 4.766        
cufflinks 4.81        
cufflinks 7.13       High
cufflinks 11.679     High High
cufflinks 3.573       Low
cufflinks 5.149        

0 Strain