Gene : Seita.5G160700 S. italica v2.2
Defline:  (1 of 1) PF00432//PF13249 - Prenyltransferase and squalene oxidase repeat (Prenyltrans) // Squalene-hopene cyclase N-terminal domain (SQHop_cyclase_N) Genomic Order:  1607
Name:  ? Seita.5G160700 Secondary Identifier:  ? PAC:32685253
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G160700 0.5kb upstream 0.5kb upstream 16635 true scaffold_5: 15154976-15171610 Setaria italica
Seita.5G160700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 15154976-15155475 Setaria italica
Seita.5G160700 0.5kb downstream 0.5kb downstream 16635 true scaffold_5: 15155476-15172110 Setaria italica
Seita.5G160700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 15171611-15172110 Setaria italica
Seita.5G160700 1.0kb upstream 1.0kb upstream 17135 true scaffold_5: 15154476-15171610 Setaria italica
Seita.5G160700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 15154476-15155475 Setaria italica
Seita.5G160700 1.0kb downstream 1.0kb downstream 17135 true scaffold_5: 15155476-15172610 Setaria italica
Seita.5G160700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 15171611-15172610 Setaria italica
Seita.5G160700 2.0kb upstream 2.0kb upstream 18135 true scaffold_5: 15153476-15171610 Setaria italica
Seita.5G160700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 15153476-15155475 Setaria italica
Seita.5G160700 2.0kb downstream 2.0kb downstream 18135 true scaffold_5: 15155476-15173610 Setaria italica
Seita.5G160700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 15171611-15173610 Setaria italica
Seita.5G160700 5.0kb upstream 5.0kb upstream 21135 true scaffold_5: 15150476-15171610 Setaria italica
Seita.5G160700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 15150476-15155475 Setaria italica
Seita.5G160700 5.0kb downstream 5.0kb downstream 21135 true scaffold_5: 15155476-15176610 Setaria italica
Seita.5G160700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 15171611-15176610 Setaria italica
Seita.5G160700 10.0kb upstream 10.0kb upstream 26135 true scaffold_5: 15145476-15171610 Setaria italica
Seita.5G160700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 15145476-15155475 Setaria italica
Seita.5G160700 10.0kb downstream 10.0kb downstream 26135 true scaffold_5: 15155476-15181610 Setaria italica
Seita.5G160700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 15171611-15181610 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028959 5273 Angiosperm View MSA
122195588 5267 Panicoideae View MSA
124584750 5269 Grass View MSA
121298379 5274 Embryophyte View MSA
123336355 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.096     Low  
cufflinks 0.096     Low  
cufflinks 0.001     Low Low
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.013     Low  
cufflinks 0.052     Low  
cufflinks 0.001     Low Low
cufflinks 0.13     Low High
cufflinks 0.95       High
cufflinks 0.013     Low  
cufflinks 0.141     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.005     Low  
cufflinks 0.008     Low  
cufflinks 0.003     Low  
cufflinks 0.002     Low Low
cufflinks 0.012     Low  

0 Strain