Gene : Seita.5G161800 S. italica v2.2
Defline:  (1 of 1) 4.2.1.55 - 3-hydroxybutyryl-CoA dehydratase / Crotonase Genomic Order:  1618
Name:  ? Seita.5G161800 Secondary Identifier:  ? PAC:32680929
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ILEUDEG-PWY Setaria italica pathologic  
Sitalica PWY-5136 Setaria italica pathologic  
Sitalica PWY-5137 Setaria italica pathologic  
Sitalica PWY-5138 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-6435 Setaria italica pathologic  
Sitalica PWY-6837 Setaria italica pathologic  
Sitalica PWY-7036 Setaria italica pathologic  
Sitalica PWY-735 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G161800 0.5kb upstream 0.5kb upstream 7170 true scaffold_5: 15490689-15497858 Setaria italica
Seita.5G161800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 15490689-15491188 Setaria italica
Seita.5G161800 0.5kb downstream 0.5kb downstream 7170 true scaffold_5: 15491189-15498358 Setaria italica
Seita.5G161800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 15497859-15498358 Setaria italica
Seita.5G161800 1.0kb upstream 1.0kb upstream 7670 true scaffold_5: 15490189-15497858 Setaria italica
Seita.5G161800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 15490189-15491188 Setaria italica
Seita.5G161800 1.0kb downstream 1.0kb downstream 7670 true scaffold_5: 15491189-15498858 Setaria italica
Seita.5G161800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 15497859-15498858 Setaria italica
Seita.5G161800 2.0kb upstream 2.0kb upstream 8670 true scaffold_5: 15489189-15497858 Setaria italica
Seita.5G161800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 15489189-15491188 Setaria italica
Seita.5G161800 2.0kb downstream 2.0kb downstream 8670 true scaffold_5: 15491189-15499858 Setaria italica
Seita.5G161800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 15497859-15499858 Setaria italica
Seita.5G161800 5.0kb upstream 5.0kb upstream 11670 true scaffold_5: 15486189-15497858 Setaria italica
Seita.5G161800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 15486189-15491188 Setaria italica
Seita.5G161800 5.0kb downstream 5.0kb downstream 11670 true scaffold_5: 15491189-15502858 Setaria italica
Seita.5G161800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 15497859-15502858 Setaria italica
Seita.5G161800 10.0kb upstream 10.0kb upstream 16670 true scaffold_5: 15481189-15497858 Setaria italica
Seita.5G161800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 15481189-15491188 Setaria italica
Seita.5G161800 10.0kb downstream 10.0kb downstream 16670 true scaffold_5: 15491189-15507858 Setaria italica
Seita.5G161800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 15497859-15507858 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189446 5267 Panicoideae View MSA
124568277 5269 Grass View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.125     High  
cufflinks 36.95     High  
cufflinks 44.813     High High
cufflinks 36.627     High  
cufflinks 29.752     High  
cufflinks 29.347     High  
cufflinks 24.848     High  
cufflinks 22.92     High  
cufflinks 27.087     High  
cufflinks 19.764     High Low
cufflinks 33.725     High  
cufflinks 28.621     High  
cufflinks 38.146     High  
cufflinks 40.696     High High
cufflinks 33.969     High  
cufflinks 21.03     High Low
cufflinks 17.608     High Low
cufflinks 34.091     High  
cufflinks 42.094     High High
cufflinks 18.726     High Low

0 Strain