Gene : Seita.5G163900 S. italica v2.2
Defline:  (1 of 1) PTHR13622//PTHR13622:SF6 - THIAMIN PYROPHOSPHOKINASE Genomic Order:  1639
Name:  ? Seita.5G163900 Secondary Identifier:  ? PAC:32681893
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6908 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G163900 0.5kb upstream 0.5kb upstream 6484 true scaffold_5: 16005251-16011734 Setaria italica
Seita.5G163900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 16011235-16011734 Setaria italica
Seita.5G163900 0.5kb downstream 0.5kb downstream 6484 true scaffold_5: 16004751-16011234 Setaria italica
Seita.5G163900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 16004751-16005250 Setaria italica
Seita.5G163900 1.0kb upstream 1.0kb upstream 6984 true scaffold_5: 16005251-16012234 Setaria italica
Seita.5G163900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 16011235-16012234 Setaria italica
Seita.5G163900 1.0kb downstream 1.0kb downstream 6984 true scaffold_5: 16004251-16011234 Setaria italica
Seita.5G163900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 16004251-16005250 Setaria italica
Seita.5G163900 2.0kb upstream 2.0kb upstream 7984 true scaffold_5: 16005251-16013234 Setaria italica
Seita.5G163900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 16011235-16013234 Setaria italica
Seita.5G163900 2.0kb downstream 2.0kb downstream 7984 true scaffold_5: 16003251-16011234 Setaria italica
Seita.5G163900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 16003251-16005250 Setaria italica
Seita.5G163900 5.0kb upstream 5.0kb upstream 10984 true scaffold_5: 16005251-16016234 Setaria italica
Seita.5G163900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 16011235-16016234 Setaria italica
Seita.5G163900 5.0kb downstream 5.0kb downstream 10984 true scaffold_5: 16000251-16011234 Setaria italica
Seita.5G163900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 16000251-16005250 Setaria italica
Seita.5G163900 10.0kb upstream 10.0kb upstream 15984 true scaffold_5: 16005251-16021234 Setaria italica
Seita.5G163900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 16011235-16021234 Setaria italica
Seita.5G163900 10.0kb downstream 10.0kb downstream 15984 true scaffold_5: 15995251-16011234 Setaria italica
Seita.5G163900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 15995251-16005250 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189565 5267 Panicoideae View MSA
124575442 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.113        
cufflinks 1.401        
cufflinks 0.542        
cufflinks 0.484       Low
cufflinks 0.27       Low
cufflinks 1.487        
cufflinks 0.94        
cufflinks 0.597        
cufflinks 0.414       Low
cufflinks 1.028        
cufflinks 1.19        
cufflinks 1.515        
cufflinks 1.729       High
cufflinks 0.537        
cufflinks 1.694       High
cufflinks 1.15        
cufflinks 1.955       High
cufflinks 0.71        
cufflinks 0.642        
cufflinks 1.865       High

0 Strain