Gene : Seita.5G246700 S. italica v2.2
Defline:  (1 of 3) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  2467
Name:  ? Seita.5G246700 Secondary Identifier:  ? PAC:32683929
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica ILEUSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica VALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G246700 0.5kb upstream 0.5kb upstream 4664 true scaffold_5: 30845056-30849719 Setaria italica
Seita.5G246700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 30845056-30845555 Setaria italica
Seita.5G246700 0.5kb downstream 0.5kb downstream 4664 true scaffold_5: 30845556-30850219 Setaria italica
Seita.5G246700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 30849720-30850219 Setaria italica
Seita.5G246700 1.0kb upstream 1.0kb upstream 5164 true scaffold_5: 30844556-30849719 Setaria italica
Seita.5G246700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 30844556-30845555 Setaria italica
Seita.5G246700 1.0kb downstream 1.0kb downstream 5164 true scaffold_5: 30845556-30850719 Setaria italica
Seita.5G246700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 30849720-30850719 Setaria italica
Seita.5G246700 2.0kb upstream 2.0kb upstream 6164 true scaffold_5: 30843556-30849719 Setaria italica
Seita.5G246700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 30843556-30845555 Setaria italica
Seita.5G246700 2.0kb downstream 2.0kb downstream 6164 true scaffold_5: 30845556-30851719 Setaria italica
Seita.5G246700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 30849720-30851719 Setaria italica
Seita.5G246700 5.0kb upstream 5.0kb upstream 9164 true scaffold_5: 30840556-30849719 Setaria italica
Seita.5G246700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 30840556-30845555 Setaria italica
Seita.5G246700 5.0kb downstream 5.0kb downstream 9164 true scaffold_5: 30845556-30854719 Setaria italica
Seita.5G246700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 30849720-30854719 Setaria italica
Seita.5G246700 10.0kb upstream 10.0kb upstream 14164 true scaffold_5: 30835556-30849719 Setaria italica
Seita.5G246700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 30835556-30845555 Setaria italica
Seita.5G246700 10.0kb downstream 10.0kb downstream 14164 true scaffold_5: 30845556-30859719 Setaria italica
Seita.5G246700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 30849720-30859719 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198766 5267 Panicoideae View MSA
124582762 5269 Grass View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 141.287     High  
cufflinks 82.781     High  
cufflinks 11.438     High Low
cufflinks 6.475       Low
cufflinks 12.449     High Low
cufflinks 73.799     High  
cufflinks 56.062     High  
cufflinks 58.175     High  
cufflinks 52.902     High  
cufflinks 85.992     High  
cufflinks 114.539     High  
cufflinks 106.263     High  
cufflinks 49.442     High  
cufflinks 21.873     High  
cufflinks 87.21     High  
cufflinks 96.627     High  
cufflinks 121.852     High  
cufflinks 179.56     High High
cufflinks 8.737       Low
cufflinks 107.49     High  

0 Strain