Gene : Seita.5G250800 S. italica v2.2
Defline:  (1 of 20) KOG0417 - Ubiquitin-protein ligase Genomic Order:  2508
Name:  ? Seita.5G250800 Secondary Identifier:  ? PAC:32685754
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G250800 0.5kb upstream 0.5kb upstream 4295 true scaffold_5: 31366108-31370402 Setaria italica
Seita.5G250800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31369903-31370402 Setaria italica
Seita.5G250800 0.5kb downstream 0.5kb downstream 4295 true scaffold_5: 31365608-31369902 Setaria italica
Seita.5G250800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31365608-31366107 Setaria italica
Seita.5G250800 1.0kb upstream 1.0kb upstream 4795 true scaffold_5: 31366108-31370902 Setaria italica
Seita.5G250800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31369903-31370902 Setaria italica
Seita.5G250800 1.0kb downstream 1.0kb downstream 4795 true scaffold_5: 31365108-31369902 Setaria italica
Seita.5G250800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31365108-31366107 Setaria italica
Seita.5G250800 2.0kb upstream 2.0kb upstream 5795 true scaffold_5: 31366108-31371902 Setaria italica
Seita.5G250800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31369903-31371902 Setaria italica
Seita.5G250800 2.0kb downstream 2.0kb downstream 5795 true scaffold_5: 31364108-31369902 Setaria italica
Seita.5G250800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31364108-31366107 Setaria italica
Seita.5G250800 5.0kb upstream 5.0kb upstream 8795 true scaffold_5: 31366108-31374902 Setaria italica
Seita.5G250800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31369903-31374902 Setaria italica
Seita.5G250800 5.0kb downstream 5.0kb downstream 8795 true scaffold_5: 31361108-31369902 Setaria italica
Seita.5G250800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31361108-31366107 Setaria italica
Seita.5G250800 10.0kb upstream 10.0kb upstream 13795 true scaffold_5: 31366108-31379902 Setaria italica
Seita.5G250800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31369903-31379902 Setaria italica
Seita.5G250800 10.0kb downstream 10.0kb downstream 13795 true scaffold_5: 31356108-31369902 Setaria italica
Seita.5G250800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31356108-31366107 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993289 5273 Angiosperm View MSA
122185902 5267 Panicoideae View MSA
124576931 5269 Grass View MSA
121263582 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.893     High  
cufflinks 19.576     High  
cufflinks 15.83     High Low
cufflinks 14.414     High Low
cufflinks 11.569     High Low
cufflinks 18.596     High  
cufflinks 26.925     High  
cufflinks 21.283     High  
cufflinks 11.063       Low
cufflinks 68.724     High High
cufflinks 56.008     High High
cufflinks 30.916     High  
cufflinks 61.929     High High
cufflinks 24.583     High  
cufflinks 78.73     High High
cufflinks 29.196     High  
cufflinks 48.987     High  
cufflinks 27.207     High  
cufflinks 35.791     High  
cufflinks 37.483     High  

0 Strain