Gene : Seita.5G255200 S. italica v2.2
Defline:  (1 of 1) PTHR11028 - VACUOLAR ATP SYNTHASE SUBUNIT AC39 Genomic Order:  2552
Name:  ? Seita.5G255200 Secondary Identifier:  ? PAC:32684613
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G255200 0.5kb upstream 0.5kb upstream 4756 true scaffold_5: 31752115-31756870 Setaria italica
Seita.5G255200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31752115-31752614 Setaria italica
Seita.5G255200 0.5kb downstream 0.5kb downstream 4756 true scaffold_5: 31752615-31757370 Setaria italica
Seita.5G255200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31756871-31757370 Setaria italica
Seita.5G255200 1.0kb upstream 1.0kb upstream 5256 true scaffold_5: 31751615-31756870 Setaria italica
Seita.5G255200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31751615-31752614 Setaria italica
Seita.5G255200 1.0kb downstream 1.0kb downstream 5256 true scaffold_5: 31752615-31757870 Setaria italica
Seita.5G255200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31756871-31757870 Setaria italica
Seita.5G255200 2.0kb upstream 2.0kb upstream 6256 true scaffold_5: 31750615-31756870 Setaria italica
Seita.5G255200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31750615-31752614 Setaria italica
Seita.5G255200 2.0kb downstream 2.0kb downstream 6256 true scaffold_5: 31752615-31758870 Setaria italica
Seita.5G255200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31756871-31758870 Setaria italica
Seita.5G255200 5.0kb upstream 5.0kb upstream 9256 true scaffold_5: 31747615-31756870 Setaria italica
Seita.5G255200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31747615-31752614 Setaria italica
Seita.5G255200 5.0kb downstream 5.0kb downstream 9256 true scaffold_5: 31752615-31761870 Setaria italica
Seita.5G255200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31756871-31761870 Setaria italica
Seita.5G255200 10.0kb upstream 10.0kb upstream 14256 true scaffold_5: 31742615-31756870 Setaria italica
Seita.5G255200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31742615-31752614 Setaria italica
Seita.5G255200 10.0kb downstream 10.0kb downstream 14256 true scaffold_5: 31752615-31766870 Setaria italica
Seita.5G255200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31756871-31766870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184881 5267 Panicoideae View MSA
124576896 5269 Grass View MSA
122045239 5273 Angiosperm View MSA
121345158 5274 Embryophyte View MSA
123427776 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.743     High  
cufflinks 36.549     High  
cufflinks 25.233     High Low
cufflinks 31.322     High  
cufflinks 31.361     High  
cufflinks 30.657     High  
cufflinks 29.459     High  
cufflinks 37.086     High  
cufflinks 29.589     High  
cufflinks 34.264     High  
cufflinks 37.068     High  
cufflinks 48.74     High High
cufflinks 56.643     High High
cufflinks 25.884     High Low
cufflinks 42.432     High  
cufflinks 23.659     High Low
cufflinks 53.8     High High
cufflinks 22.309     High Low
cufflinks 33.739     High  
cufflinks 54.656     High High

0 Strain