Gene : Seita.5G253400 S. italica v2.2
Defline:  (1 of 1) KOG1004 - Exosomal 3'-5' exoribonuclease complex subunit Rrp40 Genomic Order:  2534
Name:  ? Seita.5G253400 Secondary Identifier:  ? PAC:32686339
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G253400 0.5kb upstream 0.5kb upstream 4550 true scaffold_5: 31591771-31596320 Setaria italica
Seita.5G253400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 31595821-31596320 Setaria italica
Seita.5G253400 0.5kb downstream 0.5kb downstream 4550 true scaffold_5: 31591271-31595820 Setaria italica
Seita.5G253400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 31591271-31591770 Setaria italica
Seita.5G253400 1.0kb upstream 1.0kb upstream 5050 true scaffold_5: 31591771-31596820 Setaria italica
Seita.5G253400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 31595821-31596820 Setaria italica
Seita.5G253400 1.0kb downstream 1.0kb downstream 5050 true scaffold_5: 31590771-31595820 Setaria italica
Seita.5G253400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 31590771-31591770 Setaria italica
Seita.5G253400 2.0kb upstream 2.0kb upstream 6050 true scaffold_5: 31591771-31597820 Setaria italica
Seita.5G253400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 31595821-31597820 Setaria italica
Seita.5G253400 2.0kb downstream 2.0kb downstream 6050 true scaffold_5: 31589771-31595820 Setaria italica
Seita.5G253400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 31589771-31591770 Setaria italica
Seita.5G253400 5.0kb upstream 5.0kb upstream 9050 true scaffold_5: 31591771-31600820 Setaria italica
Seita.5G253400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 31595821-31600820 Setaria italica
Seita.5G253400 5.0kb downstream 5.0kb downstream 9050 true scaffold_5: 31586771-31595820 Setaria italica
Seita.5G253400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 31586771-31591770 Setaria italica
Seita.5G253400 10.0kb upstream 10.0kb upstream 14050 true scaffold_5: 31591771-31605820 Setaria italica
Seita.5G253400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 31595821-31605820 Setaria italica
Seita.5G253400 10.0kb downstream 10.0kb downstream 14050 true scaffold_5: 31581771-31595820 Setaria italica
Seita.5G253400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 31581771-31591770 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183592 5267 Panicoideae View MSA
124589254 5269 Grass View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.906        
cufflinks 5.401       High
cufflinks 0.987       Low
cufflinks 0.418       Low
cufflinks 0.577       Low
cufflinks 5.239       High
cufflinks 1.604        
cufflinks 2.676        
cufflinks 2.427        
cufflinks 3.831        
cufflinks 2.323        
cufflinks 3.029        
cufflinks 2.663        
cufflinks 2.267        
cufflinks 3.094        
cufflinks 1.608        
cufflinks 4.024        
cufflinks 1.768        
cufflinks 0.729       Low
cufflinks 3.627        

0 Strain