Gene : Seita.5G260600 S. italica v2.2
Defline:  (1 of 1) PTHR12599:SF2 - PCD/DCOH-LIKE PROTEIN 2 Genomic Order:  2606
Name:  ? Seita.5G260600 Secondary Identifier:  ? PAC:32681200
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G260600 0.5kb upstream 0.5kb upstream 4012 true scaffold_5: 32340794-32344805 Setaria italica
Seita.5G260600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32340794-32341293 Setaria italica
Seita.5G260600 0.5kb downstream 0.5kb downstream 4012 true scaffold_5: 32341294-32345305 Setaria italica
Seita.5G260600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32344806-32345305 Setaria italica
Seita.5G260600 1.0kb upstream 1.0kb upstream 4512 true scaffold_5: 32340294-32344805 Setaria italica
Seita.5G260600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32340294-32341293 Setaria italica
Seita.5G260600 1.0kb downstream 1.0kb downstream 4512 true scaffold_5: 32341294-32345805 Setaria italica
Seita.5G260600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32344806-32345805 Setaria italica
Seita.5G260600 2.0kb upstream 2.0kb upstream 5512 true scaffold_5: 32339294-32344805 Setaria italica
Seita.5G260600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32339294-32341293 Setaria italica
Seita.5G260600 2.0kb downstream 2.0kb downstream 5512 true scaffold_5: 32341294-32346805 Setaria italica
Seita.5G260600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32344806-32346805 Setaria italica
Seita.5G260600 5.0kb upstream 5.0kb upstream 8512 true scaffold_5: 32336294-32344805 Setaria italica
Seita.5G260600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32336294-32341293 Setaria italica
Seita.5G260600 5.0kb downstream 5.0kb downstream 8512 true scaffold_5: 32341294-32349805 Setaria italica
Seita.5G260600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32344806-32349805 Setaria italica
Seita.5G260600 10.0kb upstream 10.0kb upstream 13512 true scaffold_5: 32331294-32344805 Setaria italica
Seita.5G260600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32331294-32341293 Setaria italica
Seita.5G260600 10.0kb downstream 10.0kb downstream 13512 true scaffold_5: 32341294-32354805 Setaria italica
Seita.5G260600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32344806-32354805 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181699 5267 Panicoideae View MSA
124588275 5269 Grass View MSA
122046446 5273 Angiosperm View MSA
121348467 5274 Embryophyte View MSA
123427509 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.943       Low
cufflinks 1.41        
cufflinks 1.958       High
cufflinks 2.072       High
cufflinks 1.565        
cufflinks 1.396        
cufflinks 0.997       Low
cufflinks 2.436       High
cufflinks 1.791        
cufflinks 0.972       Low
cufflinks 0.867       Low
cufflinks 1.444        
cufflinks 1.127        
cufflinks 1.863        
cufflinks 1.145        
cufflinks 1.282        
cufflinks 1.719        
cufflinks 0.804       Low
cufflinks 1.597        
cufflinks 1.415        

0 Strain