Gene : Seita.5G259300 S. italica v2.2
Defline:  (1 of 1) PTHR22942:SF14 - DNA REPAIR PROTEIN RAD51 HOMOLOG 3 Genomic Order:  2593
Name:  ? Seita.5G259300 Secondary Identifier:  ? PAC:32685386
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G259300 0.5kb upstream 0.5kb upstream 4859 true scaffold_5: 32231864-32236722 Setaria italica
Seita.5G259300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32231864-32232363 Setaria italica
Seita.5G259300 0.5kb downstream 0.5kb downstream 4859 true scaffold_5: 32232364-32237222 Setaria italica
Seita.5G259300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32236723-32237222 Setaria italica
Seita.5G259300 1.0kb upstream 1.0kb upstream 5359 true scaffold_5: 32231364-32236722 Setaria italica
Seita.5G259300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32231364-32232363 Setaria italica
Seita.5G259300 1.0kb downstream 1.0kb downstream 5359 true scaffold_5: 32232364-32237722 Setaria italica
Seita.5G259300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32236723-32237722 Setaria italica
Seita.5G259300 2.0kb upstream 2.0kb upstream 6359 true scaffold_5: 32230364-32236722 Setaria italica
Seita.5G259300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32230364-32232363 Setaria italica
Seita.5G259300 2.0kb downstream 2.0kb downstream 6359 true scaffold_5: 32232364-32238722 Setaria italica
Seita.5G259300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32236723-32238722 Setaria italica
Seita.5G259300 5.0kb upstream 5.0kb upstream 9359 true scaffold_5: 32227364-32236722 Setaria italica
Seita.5G259300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32227364-32232363 Setaria italica
Seita.5G259300 5.0kb downstream 5.0kb downstream 9359 true scaffold_5: 32232364-32241722 Setaria italica
Seita.5G259300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32236723-32241722 Setaria italica
Seita.5G259300 10.0kb upstream 10.0kb upstream 14359 true scaffold_5: 32222364-32236722 Setaria italica
Seita.5G259300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32222364-32232363 Setaria italica
Seita.5G259300 10.0kb downstream 10.0kb downstream 14359 true scaffold_5: 32232364-32246722 Setaria italica
Seita.5G259300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32236723-32246722 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175508 5267 Panicoideae View MSA
124578538 5269 Grass View MSA
122048884 5273 Angiosperm View MSA
121349692 5274 Embryophyte View MSA
123425830 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.828        
cufflinks 0.891        
cufflinks 0.389       Low
cufflinks 0.249       Low
cufflinks 0.358       Low
cufflinks 1.087       High
cufflinks 0.492        
cufflinks 0.759        
cufflinks 0.693        
cufflinks 1.008        
cufflinks 0.851        
cufflinks 0.7        
cufflinks 0.772        
cufflinks 0.548        
cufflinks 0.646        
cufflinks 0.774        
cufflinks 1.182       High
cufflinks 0.434        
cufflinks 0.269       Low
cufflinks 1.087       High

0 Strain