Gene : Seita.5G265800 S. italica v2.2
Defline:  (1 of 2) PF05066 - HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) Genomic Order:  2658
Name:  ? Seita.5G265800 Secondary Identifier:  ? PAC:32686050
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G265800 0.5kb upstream 0.5kb upstream 17612 true scaffold_5: 32773476-32791087 Setaria italica
Seita.5G265800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 32773476-32773975 Setaria italica
Seita.5G265800 0.5kb downstream 0.5kb downstream 17612 true scaffold_5: 32773976-32791587 Setaria italica
Seita.5G265800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 32791088-32791587 Setaria italica
Seita.5G265800 1.0kb upstream 1.0kb upstream 18112 true scaffold_5: 32772976-32791087 Setaria italica
Seita.5G265800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 32772976-32773975 Setaria italica
Seita.5G265800 1.0kb downstream 1.0kb downstream 18112 true scaffold_5: 32773976-32792087 Setaria italica
Seita.5G265800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 32791088-32792087 Setaria italica
Seita.5G265800 2.0kb upstream 2.0kb upstream 19112 true scaffold_5: 32771976-32791087 Setaria italica
Seita.5G265800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 32771976-32773975 Setaria italica
Seita.5G265800 2.0kb downstream 2.0kb downstream 19112 true scaffold_5: 32773976-32793087 Setaria italica
Seita.5G265800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 32791088-32793087 Setaria italica
Seita.5G265800 5.0kb upstream 5.0kb upstream 22112 true scaffold_5: 32768976-32791087 Setaria italica
Seita.5G265800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 32768976-32773975 Setaria italica
Seita.5G265800 5.0kb downstream 5.0kb downstream 22112 true scaffold_5: 32773976-32796087 Setaria italica
Seita.5G265800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 32791088-32796087 Setaria italica
Seita.5G265800 10.0kb upstream 10.0kb upstream 27112 true scaffold_5: 32763976-32791087 Setaria italica
Seita.5G265800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 32763976-32773975 Setaria italica
Seita.5G265800 10.0kb downstream 10.0kb downstream 27112 true scaffold_5: 32773976-32801087 Setaria italica
Seita.5G265800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 32791088-32801087 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190912 5267 Panicoideae View MSA
124585412 5269 Grass View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.099     High High
cufflinks 12.417       High
cufflinks 8.039        
cufflinks 5.935        
cufflinks 5.912        
cufflinks 12.263       High
cufflinks 10.764        
cufflinks 6.722        
cufflinks 8.248        
cufflinks 4.012       Low
cufflinks 9.282        
cufflinks 6.879        
cufflinks 6.402        
cufflinks 9.674        
cufflinks 8.265        
cufflinks 16.523     High High
cufflinks 6.158        
cufflinks 13.68     High High
cufflinks 6.9        
cufflinks 6.354        

0 Strain