Gene : Seita.5G270200 S. italica v2.2
Defline:  (1 of 1) PTHR33398:SF2 - 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC Genomic Order:  2702
Name:  ? Seita.5G270200 Secondary Identifier:  ? PAC:32680788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G270200 0.5kb upstream 0.5kb upstream 2750 true scaffold_5: 33157753-33160502 Setaria italica
Seita.5G270200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33157753-33158252 Setaria italica
Seita.5G270200 0.5kb downstream 0.5kb downstream 2750 true scaffold_5: 33158253-33161002 Setaria italica
Seita.5G270200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33160503-33161002 Setaria italica
Seita.5G270200 1.0kb upstream 1.0kb upstream 3250 true scaffold_5: 33157253-33160502 Setaria italica
Seita.5G270200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33157253-33158252 Setaria italica
Seita.5G270200 1.0kb downstream 1.0kb downstream 3250 true scaffold_5: 33158253-33161502 Setaria italica
Seita.5G270200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33160503-33161502 Setaria italica
Seita.5G270200 2.0kb upstream 2.0kb upstream 4250 true scaffold_5: 33156253-33160502 Setaria italica
Seita.5G270200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33156253-33158252 Setaria italica
Seita.5G270200 2.0kb downstream 2.0kb downstream 4250 true scaffold_5: 33158253-33162502 Setaria italica
Seita.5G270200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33160503-33162502 Setaria italica
Seita.5G270200 5.0kb upstream 5.0kb upstream 7250 true scaffold_5: 33153253-33160502 Setaria italica
Seita.5G270200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33153253-33158252 Setaria italica
Seita.5G270200 5.0kb downstream 5.0kb downstream 7250 true scaffold_5: 33158253-33165502 Setaria italica
Seita.5G270200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33160503-33165502 Setaria italica
Seita.5G270200 10.0kb upstream 10.0kb upstream 12250 true scaffold_5: 33148253-33160502 Setaria italica
Seita.5G270200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33148253-33158252 Setaria italica
Seita.5G270200 10.0kb downstream 10.0kb downstream 12250 true scaffold_5: 33158253-33170502 Setaria italica
Seita.5G270200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33160503-33170502 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027102 5273 Angiosperm View MSA
122189200 5267 Panicoideae View MSA
124572146 5269 Grass View MSA
121345926 5274 Embryophyte View MSA
123425445 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.528     High  
cufflinks 17.341     High  
cufflinks 19.281     High  
cufflinks 13.59     High  
cufflinks 58.846     High High
cufflinks 17.981     High  
cufflinks 57.407     High High
cufflinks 106.509     High High
cufflinks 144.075     High High
cufflinks 21.813     High  
cufflinks 15.643     High  
cufflinks 2.077       Low
cufflinks 3.272       Low
cufflinks 31.551     High  
cufflinks 2.213       Low
cufflinks 40.06     High  
cufflinks 2.608       Low
cufflinks 12.187     High  
cufflinks 10.246        
cufflinks 2.216       Low

0 Strain