Gene : Seita.5G273300 S. italica v2.2
Defline:  (1 of 1) PTHR12087 - ORIGIN RECOGNITION COMPLEX SUBUNIT 4 Genomic Order:  2733
Name:  ? Seita.5G273300 Secondary Identifier:  ? PAC:32683839
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G273300 0.5kb upstream 0.5kb upstream 5171 true scaffold_5: 33485647-33490817 Setaria italica
Seita.5G273300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33485647-33486146 Setaria italica
Seita.5G273300 0.5kb downstream 0.5kb downstream 5171 true scaffold_5: 33486147-33491317 Setaria italica
Seita.5G273300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33490818-33491317 Setaria italica
Seita.5G273300 1.0kb upstream 1.0kb upstream 5671 true scaffold_5: 33485147-33490817 Setaria italica
Seita.5G273300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33485147-33486146 Setaria italica
Seita.5G273300 1.0kb downstream 1.0kb downstream 5671 true scaffold_5: 33486147-33491817 Setaria italica
Seita.5G273300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33490818-33491817 Setaria italica
Seita.5G273300 2.0kb upstream 2.0kb upstream 6671 true scaffold_5: 33484147-33490817 Setaria italica
Seita.5G273300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33484147-33486146 Setaria italica
Seita.5G273300 2.0kb downstream 2.0kb downstream 6671 true scaffold_5: 33486147-33492817 Setaria italica
Seita.5G273300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33490818-33492817 Setaria italica
Seita.5G273300 5.0kb upstream 5.0kb upstream 9671 true scaffold_5: 33481147-33490817 Setaria italica
Seita.5G273300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33481147-33486146 Setaria italica
Seita.5G273300 5.0kb downstream 5.0kb downstream 9671 true scaffold_5: 33486147-33495817 Setaria italica
Seita.5G273300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33490818-33495817 Setaria italica
Seita.5G273300 10.0kb upstream 10.0kb upstream 14671 true scaffold_5: 33476147-33490817 Setaria italica
Seita.5G273300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33476147-33486146 Setaria italica
Seita.5G273300 10.0kb downstream 10.0kb downstream 14671 true scaffold_5: 33486147-33500817 Setaria italica
Seita.5G273300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33490818-33500817 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190669 5267 Panicoideae View MSA
124574704 5269 Grass View MSA
122045525 5273 Angiosperm View MSA
121346008 5274 Embryophyte View MSA
123428567 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.241        
cufflinks 0.394        
cufflinks 0.07     Low  
cufflinks 0.036     Low Low
cufflinks 0.031     Low Low
cufflinks 0.445       High
cufflinks 0.138        
cufflinks 0.33        
cufflinks 0.194        
cufflinks 0.281     Low  
cufflinks 0.235        
cufflinks 0.306        
cufflinks 0.211        
cufflinks 0.112     Low  
cufflinks 0.317        
cufflinks 0.077     Low  
cufflinks 0.465       High
cufflinks 0.064     Low  
cufflinks 0.027     Low Low
cufflinks 0.416       High

0 Strain