Gene : Seita.5G272600 S. italica v2.2
Defline:  (1 of 1) PTHR12786:SF2 - SPLICING FACTOR 3A SUBUNIT 3 Genomic Order:  2726
Name:  ? Seita.5G272600 Secondary Identifier:  ? PAC:32685365
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G272600 0.5kb upstream 0.5kb upstream 7614 true scaffold_5: 33395817-33403430 Setaria italica
Seita.5G272600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33395817-33396316 Setaria italica
Seita.5G272600 0.5kb downstream 0.5kb downstream 7614 true scaffold_5: 33396317-33403930 Setaria italica
Seita.5G272600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33403431-33403930 Setaria italica
Seita.5G272600 1.0kb upstream 1.0kb upstream 8114 true scaffold_5: 33395317-33403430 Setaria italica
Seita.5G272600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33395317-33396316 Setaria italica
Seita.5G272600 1.0kb downstream 1.0kb downstream 8114 true scaffold_5: 33396317-33404430 Setaria italica
Seita.5G272600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33403431-33404430 Setaria italica
Seita.5G272600 2.0kb upstream 2.0kb upstream 9114 true scaffold_5: 33394317-33403430 Setaria italica
Seita.5G272600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33394317-33396316 Setaria italica
Seita.5G272600 2.0kb downstream 2.0kb downstream 9114 true scaffold_5: 33396317-33405430 Setaria italica
Seita.5G272600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33403431-33405430 Setaria italica
Seita.5G272600 5.0kb upstream 5.0kb upstream 12114 true scaffold_5: 33391317-33403430 Setaria italica
Seita.5G272600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33391317-33396316 Setaria italica
Seita.5G272600 5.0kb downstream 5.0kb downstream 12114 true scaffold_5: 33396317-33408430 Setaria italica
Seita.5G272600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33403431-33408430 Setaria italica
Seita.5G272600 10.0kb upstream 10.0kb upstream 17114 true scaffold_5: 33386317-33403430 Setaria italica
Seita.5G272600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33386317-33396316 Setaria italica
Seita.5G272600 10.0kb downstream 10.0kb downstream 17114 true scaffold_5: 33396317-33413430 Setaria italica
Seita.5G272600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33403431-33413430 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179392 5267 Panicoideae View MSA
124572098 5269 Grass View MSA
122042756 5273 Angiosperm View MSA
123429134 5275 Viridiplantae View MSA
121345552 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.969        
cufflinks 10.71        
cufflinks 8.605        
cufflinks 7.324       Low
cufflinks 6.866       Low
cufflinks 12.505       High
cufflinks 8.569        
cufflinks 9.868        
cufflinks 8.746        
cufflinks 8.086        
cufflinks 8.505        
cufflinks 11.465        
cufflinks 7.607        
cufflinks 9.095        
cufflinks 9.375        
cufflinks 11.831        
cufflinks 10.833        
cufflinks 19.249     High High
cufflinks 6.802       Low
cufflinks 10.531        

0 Strain