Gene : Seita.5G274900 S. italica v2.2
Defline:  (1 of 1) PTHR12843:SF5 - METHYLTRANSFERASE-LIKE PROTEIN 10 Genomic Order:  2749
Name:  ? Seita.5G274900 Secondary Identifier:  ? PAC:32683986
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G274900 0.5kb upstream 0.5kb upstream 6290 true scaffold_5: 33680437-33686726 Setaria italica
Seita.5G274900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33680437-33680936 Setaria italica
Seita.5G274900 0.5kb downstream 0.5kb downstream 6290 true scaffold_5: 33680937-33687226 Setaria italica
Seita.5G274900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33686727-33687226 Setaria italica
Seita.5G274900 1.0kb upstream 1.0kb upstream 6790 true scaffold_5: 33679937-33686726 Setaria italica
Seita.5G274900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33679937-33680936 Setaria italica
Seita.5G274900 1.0kb downstream 1.0kb downstream 6790 true scaffold_5: 33680937-33687726 Setaria italica
Seita.5G274900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33686727-33687726 Setaria italica
Seita.5G274900 2.0kb upstream 2.0kb upstream 7790 true scaffold_5: 33678937-33686726 Setaria italica
Seita.5G274900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33678937-33680936 Setaria italica
Seita.5G274900 2.0kb downstream 2.0kb downstream 7790 true scaffold_5: 33680937-33688726 Setaria italica
Seita.5G274900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33686727-33688726 Setaria italica
Seita.5G274900 5.0kb upstream 5.0kb upstream 10790 true scaffold_5: 33675937-33686726 Setaria italica
Seita.5G274900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33675937-33680936 Setaria italica
Seita.5G274900 5.0kb downstream 5.0kb downstream 10790 true scaffold_5: 33680937-33691726 Setaria italica
Seita.5G274900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33686727-33691726 Setaria italica
Seita.5G274900 10.0kb upstream 10.0kb upstream 15790 true scaffold_5: 33670937-33686726 Setaria italica
Seita.5G274900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33670937-33680936 Setaria italica
Seita.5G274900 10.0kb downstream 10.0kb downstream 15790 true scaffold_5: 33680937-33696726 Setaria italica
Seita.5G274900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33686727-33696726 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186098 5267 Panicoideae View MSA
124589264 5269 Grass View MSA
122041744 5273 Angiosperm View MSA
121347606 5274 Embryophyte View MSA
123380579 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.176        
cufflinks 3.018        
cufflinks 1.809       Low
cufflinks 1.671       Low
cufflinks 1.451       Low
cufflinks 2.806        
cufflinks 2.547        
cufflinks 2.749        
cufflinks 2.117        
cufflinks 3.834       High
cufflinks 2.816        
cufflinks 4.017       High
cufflinks 2.81        
cufflinks 2.514        
cufflinks 3.318        
cufflinks 2.136        
cufflinks 4.469       High
cufflinks 3.155        
cufflinks 2.404        
cufflinks 3.98       High

0 Strain