Gene : Seita.5G274300 S. italica v2.2
Defline:  (1 of 1) PTHR10459:SF38 - DNA LIGASE Genomic Order:  2743
Name:  ? Seita.5G274300 Secondary Identifier:  ? PAC:32682065
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G274300 0.5kb upstream 0.5kb upstream 11184 true scaffold_5: 33618584-33629767 Setaria italica
Seita.5G274300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33629268-33629767 Setaria italica
Seita.5G274300 0.5kb downstream 0.5kb downstream 11184 true scaffold_5: 33618084-33629267 Setaria italica
Seita.5G274300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33618084-33618583 Setaria italica
Seita.5G274300 1.0kb upstream 1.0kb upstream 11684 true scaffold_5: 33618584-33630267 Setaria italica
Seita.5G274300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33629268-33630267 Setaria italica
Seita.5G274300 1.0kb downstream 1.0kb downstream 11684 true scaffold_5: 33617584-33629267 Setaria italica
Seita.5G274300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33617584-33618583 Setaria italica
Seita.5G274300 2.0kb upstream 2.0kb upstream 12684 true scaffold_5: 33618584-33631267 Setaria italica
Seita.5G274300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33629268-33631267 Setaria italica
Seita.5G274300 2.0kb downstream 2.0kb downstream 12684 true scaffold_5: 33616584-33629267 Setaria italica
Seita.5G274300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33616584-33618583 Setaria italica
Seita.5G274300 5.0kb upstream 5.0kb upstream 15684 true scaffold_5: 33618584-33634267 Setaria italica
Seita.5G274300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33629268-33634267 Setaria italica
Seita.5G274300 5.0kb downstream 5.0kb downstream 15684 true scaffold_5: 33613584-33629267 Setaria italica
Seita.5G274300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33613584-33618583 Setaria italica
Seita.5G274300 10.0kb upstream 10.0kb upstream 20684 true scaffold_5: 33618584-33639267 Setaria italica
Seita.5G274300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33629268-33639267 Setaria italica
Seita.5G274300 10.0kb downstream 10.0kb downstream 20684 true scaffold_5: 33608584-33629267 Setaria italica
Seita.5G274300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33608584-33618583 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181784 5267 Panicoideae View MSA
124574730 5269 Grass View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.977        
cufflinks 3.745        
cufflinks 3.728        
cufflinks 2.319        
cufflinks 1.9       Low
cufflinks 3.939        
cufflinks 3.492        
cufflinks 1.819       Low
cufflinks 1.703       Low
cufflinks 1.583       Low
cufflinks 3.009        
cufflinks 2.953        
cufflinks 2.751        
cufflinks 3.567        
cufflinks 3.225        
cufflinks 5.138       High
cufflinks 2.442        
cufflinks 4.277       High
cufflinks 2.425        
cufflinks 2.907        

0 Strain