Gene : Seita.5G276200 S. italica v2.2
Defline:  (1 of 5) PTHR11722 - 60S RIBOSOMAL PROTEIN L13 Genomic Order:  2762
Name:  ? Seita.5G276200 Secondary Identifier:  ? PAC:32685346
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G276200 0.5kb upstream 0.5kb upstream 2107 true scaffold_5: 33765724-33767830 Setaria italica
Seita.5G276200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33767331-33767830 Setaria italica
Seita.5G276200 0.5kb downstream 0.5kb downstream 2107 true scaffold_5: 33765224-33767330 Setaria italica
Seita.5G276200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33765224-33765723 Setaria italica
Seita.5G276200 1.0kb upstream 1.0kb upstream 2607 true scaffold_5: 33765724-33768330 Setaria italica
Seita.5G276200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33767331-33768330 Setaria italica
Seita.5G276200 1.0kb downstream 1.0kb downstream 2607 true scaffold_5: 33764724-33767330 Setaria italica
Seita.5G276200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33764724-33765723 Setaria italica
Seita.5G276200 2.0kb upstream 2.0kb upstream 3607 true scaffold_5: 33765724-33769330 Setaria italica
Seita.5G276200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33767331-33769330 Setaria italica
Seita.5G276200 2.0kb downstream 2.0kb downstream 3607 true scaffold_5: 33763724-33767330 Setaria italica
Seita.5G276200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33763724-33765723 Setaria italica
Seita.5G276200 5.0kb upstream 5.0kb upstream 6607 true scaffold_5: 33765724-33772330 Setaria italica
Seita.5G276200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33767331-33772330 Setaria italica
Seita.5G276200 5.0kb downstream 5.0kb downstream 6607 true scaffold_5: 33760724-33767330 Setaria italica
Seita.5G276200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33760724-33765723 Setaria italica
Seita.5G276200 10.0kb upstream 10.0kb upstream 11607 true scaffold_5: 33765724-33777330 Setaria italica
Seita.5G276200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33767331-33777330 Setaria italica
Seita.5G276200 10.0kb downstream 10.0kb downstream 11607 true scaffold_5: 33755724-33767330 Setaria italica
Seita.5G276200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33755724-33765723 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195726 5267 Panicoideae View MSA
124570467 5269 Grass View MSA
122049765 5273 Angiosperm View MSA
121344371 5274 Embryophyte View MSA
123426358 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 84.495     High  
cufflinks 88.476     High  
cufflinks 12.362     High Low
cufflinks 6.305       Low
cufflinks 20.318     High Low
cufflinks 96.016     High  
cufflinks 61.045     High  
cufflinks 101.217     High  
cufflinks 110.588     High  
cufflinks 211.177     High High
cufflinks 80.543     High  
cufflinks 77.193     High  
cufflinks 56.929     High  
cufflinks 30.172     High  
cufflinks 76.615     High  
cufflinks 54.221     High  
cufflinks 115.987     High  
cufflinks 74.235     High  
cufflinks 17.144     High Low
cufflinks 96.955     High  

0 Strain