Gene : Seita.5G276100 S. italica v2.2
Defline:  (1 of 3) 2.5.1.112//2.5.1.27 - Adenylate dimethylallyltransferase (ADP/ATP-dependent) / Isopentenyltransferase // Adenylate dimethylallyltransferase (AMP-dependent) / Isopentenyltransferase Genomic Order:  2761
Name:  ? Seita.5G276100 Secondary Identifier:  ? PAC:32682123
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2681 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G276100 0.5kb upstream 0.5kb upstream 1601 true scaffold_5: 33756256-33757856 Setaria italica
Seita.5G276100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33756256-33756755 Setaria italica
Seita.5G276100 0.5kb downstream 0.5kb downstream 1601 true scaffold_5: 33756756-33758356 Setaria italica
Seita.5G276100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33757857-33758356 Setaria italica
Seita.5G276100 1.0kb upstream 1.0kb upstream 2101 true scaffold_5: 33755756-33757856 Setaria italica
Seita.5G276100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33755756-33756755 Setaria italica
Seita.5G276100 1.0kb downstream 1.0kb downstream 2101 true scaffold_5: 33756756-33758856 Setaria italica
Seita.5G276100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33757857-33758856 Setaria italica
Seita.5G276100 2.0kb upstream 2.0kb upstream 3101 true scaffold_5: 33754756-33757856 Setaria italica
Seita.5G276100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33754756-33756755 Setaria italica
Seita.5G276100 2.0kb downstream 2.0kb downstream 3101 true scaffold_5: 33756756-33759856 Setaria italica
Seita.5G276100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33757857-33759856 Setaria italica
Seita.5G276100 5.0kb upstream 5.0kb upstream 6101 true scaffold_5: 33751756-33757856 Setaria italica
Seita.5G276100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33751756-33756755 Setaria italica
Seita.5G276100 5.0kb downstream 5.0kb downstream 6101 true scaffold_5: 33756756-33762856 Setaria italica
Seita.5G276100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33757857-33762856 Setaria italica
Seita.5G276100 10.0kb upstream 10.0kb upstream 11101 true scaffold_5: 33746756-33757856 Setaria italica
Seita.5G276100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33746756-33756755 Setaria italica
Seita.5G276100 10.0kb downstream 10.0kb downstream 11101 true scaffold_5: 33756756-33767856 Setaria italica
Seita.5G276100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33757857-33767856 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190785 5267 Panicoideae View MSA
124582754 5269 Grass View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.08     Low  
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.034     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.092     Low  
cufflinks 0.218       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.138        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.122     Low  

0 Strain