Gene : Seita.5G275700 S. italica v2.2
Defline:  (1 of 5) PTHR11722 - 60S RIBOSOMAL PROTEIN L13 Genomic Order:  2757
Name:  ? Seita.5G275700 Secondary Identifier:  ? PAC:32684650
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G275700 0.5kb upstream 0.5kb upstream 3607 true scaffold_5: 33730071-33733677 Setaria italica
Seita.5G275700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33730071-33730570 Setaria italica
Seita.5G275700 0.5kb downstream 0.5kb downstream 3607 true scaffold_5: 33730571-33734177 Setaria italica
Seita.5G275700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33733678-33734177 Setaria italica
Seita.5G275700 1.0kb upstream 1.0kb upstream 4107 true scaffold_5: 33729571-33733677 Setaria italica
Seita.5G275700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33729571-33730570 Setaria italica
Seita.5G275700 1.0kb downstream 1.0kb downstream 4107 true scaffold_5: 33730571-33734677 Setaria italica
Seita.5G275700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33733678-33734677 Setaria italica
Seita.5G275700 2.0kb upstream 2.0kb upstream 5107 true scaffold_5: 33728571-33733677 Setaria italica
Seita.5G275700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33728571-33730570 Setaria italica
Seita.5G275700 2.0kb downstream 2.0kb downstream 5107 true scaffold_5: 33730571-33735677 Setaria italica
Seita.5G275700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33733678-33735677 Setaria italica
Seita.5G275700 5.0kb upstream 5.0kb upstream 8107 true scaffold_5: 33725571-33733677 Setaria italica
Seita.5G275700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33725571-33730570 Setaria italica
Seita.5G275700 5.0kb downstream 5.0kb downstream 8107 true scaffold_5: 33730571-33738677 Setaria italica
Seita.5G275700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33733678-33738677 Setaria italica
Seita.5G275700 10.0kb upstream 10.0kb upstream 13107 true scaffold_5: 33720571-33733677 Setaria italica
Seita.5G275700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33720571-33730570 Setaria italica
Seita.5G275700 10.0kb downstream 10.0kb downstream 13107 true scaffold_5: 33730571-33743677 Setaria italica
Seita.5G275700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33733678-33743677 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195726 5267 Panicoideae View MSA
124570467 5269 Grass View MSA
122049765 5273 Angiosperm View MSA
121344371 5274 Embryophyte View MSA
123426358 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 99.202     High  
cufflinks 88.7     High  
cufflinks 19.076     High Low
cufflinks 13.571     High Low
cufflinks 30.302     High Low
cufflinks 99.76     High  
cufflinks 70.223     High  
cufflinks 134.371     High  
cufflinks 141.57     High High
cufflinks 176.495     High High
cufflinks 98.556     High  
cufflinks 91.411     High  
cufflinks 73.571     High  
cufflinks 35.847     High  
cufflinks 93.143     High  
cufflinks 51.351     High  
cufflinks 133.862     High  
cufflinks 68.861     High  
cufflinks 25.179     High Low
cufflinks 114.554     High  

0 Strain