Gene : Seita.5G279100 S. italica v2.2
Defline:  (1 of 2) PTHR31285:SF0 - PROMOTER OF FILAMENTATION PROTEIN 1 Genomic Order:  2791
Name:  ? Seita.5G279100 Secondary Identifier:  ? PAC:32681730
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica COA-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G279100 0.5kb upstream 0.5kb upstream 5599 true scaffold_5: 33926017-33931615 Setaria italica
Seita.5G279100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33931116-33931615 Setaria italica
Seita.5G279100 0.5kb downstream 0.5kb downstream 5599 true scaffold_5: 33925517-33931115 Setaria italica
Seita.5G279100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33925517-33926016 Setaria italica
Seita.5G279100 1.0kb upstream 1.0kb upstream 6099 true scaffold_5: 33926017-33932115 Setaria italica
Seita.5G279100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33931116-33932115 Setaria italica
Seita.5G279100 1.0kb downstream 1.0kb downstream 6099 true scaffold_5: 33925017-33931115 Setaria italica
Seita.5G279100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33925017-33926016 Setaria italica
Seita.5G279100 2.0kb upstream 2.0kb upstream 7099 true scaffold_5: 33926017-33933115 Setaria italica
Seita.5G279100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33931116-33933115 Setaria italica
Seita.5G279100 2.0kb downstream 2.0kb downstream 7099 true scaffold_5: 33924017-33931115 Setaria italica
Seita.5G279100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33924017-33926016 Setaria italica
Seita.5G279100 5.0kb upstream 5.0kb upstream 10099 true scaffold_5: 33926017-33936115 Setaria italica
Seita.5G279100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33931116-33936115 Setaria italica
Seita.5G279100 5.0kb downstream 5.0kb downstream 10099 true scaffold_5: 33921017-33931115 Setaria italica
Seita.5G279100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33921017-33926016 Setaria italica
Seita.5G279100 10.0kb upstream 10.0kb upstream 15099 true scaffold_5: 33926017-33941115 Setaria italica
Seita.5G279100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33931116-33941115 Setaria italica
Seita.5G279100 10.0kb downstream 10.0kb downstream 15099 true scaffold_5: 33916017-33931115 Setaria italica
Seita.5G279100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33916017-33926016 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176374 5267 Panicoideae View MSA
124577537 5269 Grass View MSA
122047029 5273 Angiosperm View MSA
121345024 5274 Embryophyte View MSA
123425109 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.559       High
cufflinks 1.805        
cufflinks 1.75        
cufflinks 1.523        
cufflinks 1.137       Low
cufflinks 1.536        
cufflinks 1.784        
cufflinks 1.579        
cufflinks 1.049       Low
cufflinks 1.812        
cufflinks 1.935        
cufflinks 1.855        
cufflinks 1.706        
cufflinks 1.544        
cufflinks 1.862        
cufflinks 2.467       High
cufflinks 1.9        
cufflinks 2.264       High
cufflinks 1.268       Low
cufflinks 1.958        

0 Strain