Gene : Seita.5G279000 S. italica v2.2
Defline:  (1 of 3) PTHR10994:SF85 - RETICULON-LIKE PROTEIN B14-RELATED Genomic Order:  2790
Name:  ? Seita.5G279000 Secondary Identifier:  ? PAC:32684653
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G279000 0.5kb upstream 0.5kb upstream 2300 true scaffold_5: 33924547-33926846 Setaria italica
Seita.5G279000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 33924547-33925046 Setaria italica
Seita.5G279000 0.5kb downstream 0.5kb downstream 2300 true scaffold_5: 33925047-33927346 Setaria italica
Seita.5G279000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 33926847-33927346 Setaria italica
Seita.5G279000 1.0kb upstream 1.0kb upstream 2800 true scaffold_5: 33924047-33926846 Setaria italica
Seita.5G279000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 33924047-33925046 Setaria italica
Seita.5G279000 1.0kb downstream 1.0kb downstream 2800 true scaffold_5: 33925047-33927846 Setaria italica
Seita.5G279000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 33926847-33927846 Setaria italica
Seita.5G279000 2.0kb upstream 2.0kb upstream 3800 true scaffold_5: 33923047-33926846 Setaria italica
Seita.5G279000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 33923047-33925046 Setaria italica
Seita.5G279000 2.0kb downstream 2.0kb downstream 3800 true scaffold_5: 33925047-33928846 Setaria italica
Seita.5G279000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 33926847-33928846 Setaria italica
Seita.5G279000 5.0kb upstream 5.0kb upstream 6800 true scaffold_5: 33920047-33926846 Setaria italica
Seita.5G279000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 33920047-33925046 Setaria italica
Seita.5G279000 5.0kb downstream 5.0kb downstream 6800 true scaffold_5: 33925047-33931846 Setaria italica
Seita.5G279000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 33926847-33931846 Setaria italica
Seita.5G279000 10.0kb upstream 10.0kb upstream 11800 true scaffold_5: 33915047-33926846 Setaria italica
Seita.5G279000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 33915047-33925046 Setaria italica
Seita.5G279000 10.0kb downstream 10.0kb downstream 11800 true scaffold_5: 33925047-33936846 Setaria italica
Seita.5G279000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 33926847-33936846 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177016 5267 Panicoideae View MSA
124581377 5269 Grass View MSA
122048457 5273 Angiosperm View MSA
123429002 5275 Viridiplantae View MSA
121351639 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.912       High
cufflinks 1.102        
cufflinks 0.89        
cufflinks 0.755       Low
cufflinks 0.457       Low
cufflinks 1.45        
cufflinks 1.911        
cufflinks 2.363        
cufflinks 3.386        
cufflinks 4.689        
cufflinks 5.873       High
cufflinks 2.885        
cufflinks 11.425       High
cufflinks 1.119        
cufflinks 6.481       High
cufflinks 0.763       Low
cufflinks 3.903        
cufflinks 0.616       Low
cufflinks 0.657       Low
cufflinks 4.927        

0 Strain