Gene : Seita.5G202400 S. italica v2.2
Defline:  (1 of 2) PTHR11014:SF55 - IAA-AMINO ACID HYDROLASE ILR1-LIKE 1-RELATED Genomic Order:  2024
Name:  ? Seita.5G202400 Secondary Identifier:  ? PAC:32684460
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G202400 0.5kb upstream 0.5kb upstream 5898 true scaffold_5: 25951243-25957140 Setaria italica
Seita.5G202400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25956641-25957140 Setaria italica
Seita.5G202400 0.5kb downstream 0.5kb downstream 5898 true scaffold_5: 25950743-25956640 Setaria italica
Seita.5G202400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25950743-25951242 Setaria italica
Seita.5G202400 1.0kb upstream 1.0kb upstream 6398 true scaffold_5: 25951243-25957640 Setaria italica
Seita.5G202400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25956641-25957640 Setaria italica
Seita.5G202400 1.0kb downstream 1.0kb downstream 6398 true scaffold_5: 25950243-25956640 Setaria italica
Seita.5G202400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25950243-25951242 Setaria italica
Seita.5G202400 2.0kb upstream 2.0kb upstream 7398 true scaffold_5: 25951243-25958640 Setaria italica
Seita.5G202400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25956641-25958640 Setaria italica
Seita.5G202400 2.0kb downstream 2.0kb downstream 7398 true scaffold_5: 25949243-25956640 Setaria italica
Seita.5G202400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25949243-25951242 Setaria italica
Seita.5G202400 5.0kb upstream 5.0kb upstream 10398 true scaffold_5: 25951243-25961640 Setaria italica
Seita.5G202400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25956641-25961640 Setaria italica
Seita.5G202400 5.0kb downstream 5.0kb downstream 10398 true scaffold_5: 25946243-25956640 Setaria italica
Seita.5G202400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25946243-25951242 Setaria italica
Seita.5G202400 10.0kb upstream 10.0kb upstream 15398 true scaffold_5: 25951243-25966640 Setaria italica
Seita.5G202400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25956641-25966640 Setaria italica
Seita.5G202400 10.0kb downstream 10.0kb downstream 15398 true scaffold_5: 25941243-25956640 Setaria italica
Seita.5G202400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25941243-25951242 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188380 5267 Panicoideae View MSA
124574004 5269 Grass View MSA
122042438 5273 Angiosperm View MSA
121350602 5274 Embryophyte View MSA
123427442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.929        
cufflinks 10.01        
cufflinks 7.452        
cufflinks 7.699        
cufflinks 7.169        
cufflinks 10.915        
cufflinks 7.086        
cufflinks 7.189        
cufflinks 8.114        
cufflinks 14.67       High
cufflinks 13.549     High  
cufflinks 12.738        
cufflinks 17.626     High High
cufflinks 10.668        
cufflinks 14.487     High High
cufflinks 4.519       Low
cufflinks 15.159     High High
cufflinks 7.258        
cufflinks 8.339        
cufflinks 11.575        

0 Strain