Gene : Seita.5G206500 S. italica v2.2
Genomic Order:  2065 Name:  ? Seita.5G206500
Secondary Identifier:  ? PAC:32681680
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G206500 0.5kb upstream 0.5kb upstream 3657 true scaffold_5: 26543695-26547351 Setaria italica
Seita.5G206500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 26546852-26547351 Setaria italica
Seita.5G206500 0.5kb downstream 0.5kb downstream 3657 true scaffold_5: 26543195-26546851 Setaria italica
Seita.5G206500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 26543195-26543694 Setaria italica
Seita.5G206500 1.0kb upstream 1.0kb upstream 4157 true scaffold_5: 26543695-26547851 Setaria italica
Seita.5G206500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 26546852-26547851 Setaria italica
Seita.5G206500 1.0kb downstream 1.0kb downstream 4157 true scaffold_5: 26542695-26546851 Setaria italica
Seita.5G206500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 26542695-26543694 Setaria italica
Seita.5G206500 2.0kb upstream 2.0kb upstream 5157 true scaffold_5: 26543695-26548851 Setaria italica
Seita.5G206500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 26546852-26548851 Setaria italica
Seita.5G206500 2.0kb downstream 2.0kb downstream 5157 true scaffold_5: 26541695-26546851 Setaria italica
Seita.5G206500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 26541695-26543694 Setaria italica
Seita.5G206500 5.0kb upstream 5.0kb upstream 8157 true scaffold_5: 26543695-26551851 Setaria italica
Seita.5G206500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 26546852-26551851 Setaria italica
Seita.5G206500 5.0kb downstream 5.0kb downstream 8157 true scaffold_5: 26538695-26546851 Setaria italica
Seita.5G206500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 26538695-26543694 Setaria italica
Seita.5G206500 10.0kb upstream 10.0kb upstream 13157 true scaffold_5: 26543695-26556851 Setaria italica
Seita.5G206500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 26546852-26556851 Setaria italica
Seita.5G206500 10.0kb downstream 10.0kb downstream 13157 true scaffold_5: 26533695-26546851 Setaria italica
Seita.5G206500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 26533695-26543694 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184635 5267 Panicoideae View MSA
124569577 5269 Grass View MSA
122041581 5273 Angiosperm View MSA
121351725 5274 Embryophyte View MSA
123382293 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.248        
cufflinks 1.934        
cufflinks 4.656        
cufflinks 11.645     High  
cufflinks 26.789     High High
cufflinks 1.396       Low
cufflinks 12.597       High
cufflinks 1.963        
cufflinks 16.728     High High
cufflinks 1.385       Low
cufflinks 3.333        
cufflinks 6.266        
cufflinks 1.492       Low
cufflinks 19.415     High High
cufflinks 4.208        
cufflinks 2.936        
cufflinks 1.68       Low
cufflinks 3.366        
cufflinks 10.727        
cufflinks 5.087        

0 Strain