Gene : Seita.5G208400 S. italica v2.2
Defline:  (1 of 1) PTHR22844:SF202 - STOMATAL CYTOKINESIS DEFECTIVE Genomic Order:  2084
Name:  ? Seita.5G208400 Secondary Identifier:  ? PAC:32685039
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G208400 0.5kb upstream 0.5kb upstream 20087 true scaffold_5: 26785067-26805153 Setaria italica
Seita.5G208400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 26804654-26805153 Setaria italica
Seita.5G208400 0.5kb downstream 0.5kb downstream 20087 true scaffold_5: 26784567-26804653 Setaria italica
Seita.5G208400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 26784567-26785066 Setaria italica
Seita.5G208400 1.0kb upstream 1.0kb upstream 20587 true scaffold_5: 26785067-26805653 Setaria italica
Seita.5G208400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 26804654-26805653 Setaria italica
Seita.5G208400 1.0kb downstream 1.0kb downstream 20587 true scaffold_5: 26784067-26804653 Setaria italica
Seita.5G208400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 26784067-26785066 Setaria italica
Seita.5G208400 2.0kb upstream 2.0kb upstream 21587 true scaffold_5: 26785067-26806653 Setaria italica
Seita.5G208400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 26804654-26806653 Setaria italica
Seita.5G208400 2.0kb downstream 2.0kb downstream 21587 true scaffold_5: 26783067-26804653 Setaria italica
Seita.5G208400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 26783067-26785066 Setaria italica
Seita.5G208400 5.0kb upstream 5.0kb upstream 24587 true scaffold_5: 26785067-26809653 Setaria italica
Seita.5G208400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 26804654-26809653 Setaria italica
Seita.5G208400 5.0kb downstream 5.0kb downstream 24587 true scaffold_5: 26780067-26804653 Setaria italica
Seita.5G208400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 26780067-26785066 Setaria italica
Seita.5G208400 10.0kb upstream 10.0kb upstream 29587 true scaffold_5: 26785067-26814653 Setaria italica
Seita.5G208400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 26804654-26814653 Setaria italica
Seita.5G208400 10.0kb downstream 10.0kb downstream 29587 true scaffold_5: 26775067-26804653 Setaria italica
Seita.5G208400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 26775067-26785066 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177598 5267 Panicoideae View MSA
124568840 5269 Grass View MSA
122045572 5273 Angiosperm View MSA
121345381 5274 Embryophyte View MSA
123380209 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.025       High
cufflinks 5.96       High
cufflinks 5.768       High
cufflinks 4.923        
cufflinks 3.673       Low
cufflinks 5.684        
cufflinks 4.723        
cufflinks 4.055        
cufflinks 3.651       Low
cufflinks 2.939       Low
cufflinks 5.814       High
cufflinks 4.775        
cufflinks 5.478        
cufflinks 5.113        
cufflinks 5.693        
cufflinks 4.336        
cufflinks 4.197        
cufflinks 3.672       Low
cufflinks 3.834        
cufflinks 5.127        

0 Strain