Gene : Seita.5G209500 S. italica v2.2
Genomic Order:  2095 Name:  ? Seita.5G209500
Secondary Identifier:  ? PAC:32685636
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G209500 0.5kb upstream 0.5kb upstream 2923 true scaffold_5: 26933359-26936281 Setaria italica
Seita.5G209500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 26935782-26936281 Setaria italica
Seita.5G209500 0.5kb downstream 0.5kb downstream 2923 true scaffold_5: 26932859-26935781 Setaria italica
Seita.5G209500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 26932859-26933358 Setaria italica
Seita.5G209500 1.0kb upstream 1.0kb upstream 3423 true scaffold_5: 26933359-26936781 Setaria italica
Seita.5G209500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 26935782-26936781 Setaria italica
Seita.5G209500 1.0kb downstream 1.0kb downstream 3423 true scaffold_5: 26932359-26935781 Setaria italica
Seita.5G209500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 26932359-26933358 Setaria italica
Seita.5G209500 2.0kb upstream 2.0kb upstream 4423 true scaffold_5: 26933359-26937781 Setaria italica
Seita.5G209500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 26935782-26937781 Setaria italica
Seita.5G209500 2.0kb downstream 2.0kb downstream 4423 true scaffold_5: 26931359-26935781 Setaria italica
Seita.5G209500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 26931359-26933358 Setaria italica
Seita.5G209500 5.0kb upstream 5.0kb upstream 7423 true scaffold_5: 26933359-26940781 Setaria italica
Seita.5G209500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 26935782-26940781 Setaria italica
Seita.5G209500 5.0kb downstream 5.0kb downstream 7423 true scaffold_5: 26928359-26935781 Setaria italica
Seita.5G209500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 26928359-26933358 Setaria italica
Seita.5G209500 10.0kb upstream 10.0kb upstream 12423 true scaffold_5: 26933359-26945781 Setaria italica
Seita.5G209500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 26935782-26945781 Setaria italica
Seita.5G209500 10.0kb downstream 10.0kb downstream 12423 true scaffold_5: 26923359-26935781 Setaria italica
Seita.5G209500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 26923359-26933358 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181371 5267 Panicoideae View MSA
124588679 5269 Grass View MSA
122042623 5273 Angiosperm View MSA
121349599 5274 Embryophyte View MSA
123428775 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.025     High  
cufflinks 14.317     High  
cufflinks 10.11       Low
cufflinks 11.832     High  
cufflinks 13.334     High  
cufflinks 15.407     High  
cufflinks 10.658       Low
cufflinks 16.237     High  
cufflinks 13.71     High  
cufflinks 21.831     High High
cufflinks 16.723     High  
cufflinks 14.15     High  
cufflinks 21.739     High High
cufflinks 10.839       Low
cufflinks 15.395     High  
cufflinks 13.13     High  
cufflinks 17.126     High  
cufflinks 16.291     High  
cufflinks 10.486       Low
cufflinks 15.039     High  

0 Strain