Gene : Seita.5G218100 S. italica v2.2
Defline:  (1 of 1) PTHR20922:SF17 - F24J5.3 Genomic Order:  2181
Name:  ? Seita.5G218100 Secondary Identifier:  ? PAC:32683623
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G218100 0.5kb upstream 0.5kb upstream 2295 true scaffold_5: 27785767-27788061 Setaria italica
Seita.5G218100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 27787562-27788061 Setaria italica
Seita.5G218100 0.5kb downstream 0.5kb downstream 2295 true scaffold_5: 27785267-27787561 Setaria italica
Seita.5G218100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 27785267-27785766 Setaria italica
Seita.5G218100 1.0kb upstream 1.0kb upstream 2795 true scaffold_5: 27785767-27788561 Setaria italica
Seita.5G218100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 27787562-27788561 Setaria italica
Seita.5G218100 1.0kb downstream 1.0kb downstream 2795 true scaffold_5: 27784767-27787561 Setaria italica
Seita.5G218100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 27784767-27785766 Setaria italica
Seita.5G218100 2.0kb upstream 2.0kb upstream 3795 true scaffold_5: 27785767-27789561 Setaria italica
Seita.5G218100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 27787562-27789561 Setaria italica
Seita.5G218100 2.0kb downstream 2.0kb downstream 3795 true scaffold_5: 27783767-27787561 Setaria italica
Seita.5G218100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 27783767-27785766 Setaria italica
Seita.5G218100 5.0kb upstream 5.0kb upstream 6795 true scaffold_5: 27785767-27792561 Setaria italica
Seita.5G218100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 27787562-27792561 Setaria italica
Seita.5G218100 5.0kb downstream 5.0kb downstream 6795 true scaffold_5: 27780767-27787561 Setaria italica
Seita.5G218100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 27780767-27785766 Setaria italica
Seita.5G218100 10.0kb upstream 10.0kb upstream 11795 true scaffold_5: 27785767-27797561 Setaria italica
Seita.5G218100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 27787562-27797561 Setaria italica
Seita.5G218100 10.0kb downstream 10.0kb downstream 11795 true scaffold_5: 27775767-27787561 Setaria italica
Seita.5G218100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 27775767-27785766 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188273 5267 Panicoideae View MSA
124581215 5269 Grass View MSA
122048491 5273 Angiosperm View MSA
121349693 5274 Embryophyte View MSA
123425918 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.054        
cufflinks 1.958        
cufflinks 2.26        
cufflinks 3.04        
cufflinks 3.019        
cufflinks 1.707        
cufflinks 3.291        
cufflinks 6.735       High
cufflinks 4.649       High
cufflinks 1.959        
cufflinks 1.125       Low
cufflinks 2.369        
cufflinks 1.915        
cufflinks 4.041       High
cufflinks 1.51       Low
cufflinks 2.418        
cufflinks 2.681        
cufflinks 1.923        
cufflinks 2.51        
cufflinks 2.148        

0 Strain