Gene : Seita.5G218300 S. italica v2.2
Genomic Order:  2183 Name:  ? Seita.5G218300
Secondary Identifier:  ? PAC:32681822
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G218300 0.5kb upstream 0.5kb upstream 4134 true scaffold_5: 27791276-27795409 Setaria italica
Seita.5G218300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 27791276-27791775 Setaria italica
Seita.5G218300 0.5kb downstream 0.5kb downstream 4134 true scaffold_5: 27791776-27795909 Setaria italica
Seita.5G218300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 27795410-27795909 Setaria italica
Seita.5G218300 1.0kb upstream 1.0kb upstream 4634 true scaffold_5: 27790776-27795409 Setaria italica
Seita.5G218300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 27790776-27791775 Setaria italica
Seita.5G218300 1.0kb downstream 1.0kb downstream 4634 true scaffold_5: 27791776-27796409 Setaria italica
Seita.5G218300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 27795410-27796409 Setaria italica
Seita.5G218300 2.0kb upstream 2.0kb upstream 5634 true scaffold_5: 27789776-27795409 Setaria italica
Seita.5G218300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 27789776-27791775 Setaria italica
Seita.5G218300 2.0kb downstream 2.0kb downstream 5634 true scaffold_5: 27791776-27797409 Setaria italica
Seita.5G218300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 27795410-27797409 Setaria italica
Seita.5G218300 5.0kb upstream 5.0kb upstream 8634 true scaffold_5: 27786776-27795409 Setaria italica
Seita.5G218300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 27786776-27791775 Setaria italica
Seita.5G218300 5.0kb downstream 5.0kb downstream 8634 true scaffold_5: 27791776-27800409 Setaria italica
Seita.5G218300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 27795410-27800409 Setaria italica
Seita.5G218300 10.0kb upstream 10.0kb upstream 13634 true scaffold_5: 27781776-27795409 Setaria italica
Seita.5G218300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 27781776-27791775 Setaria italica
Seita.5G218300 10.0kb downstream 10.0kb downstream 13634 true scaffold_5: 27791776-27805409 Setaria italica
Seita.5G218300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 27795410-27805409 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176799 5267 Panicoideae View MSA
124572130 5269 Grass View MSA
122042418 5273 Angiosperm View MSA
121309964 5274 Embryophyte View MSA
123347582 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.018     Low  
cufflinks 0.101     Low High
cufflinks 0.01     Low Low
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099     Low High
cufflinks 0.024     Low  
cufflinks 0.132       High
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low  
cufflinks 0.05     Low  
cufflinks 0.046     Low  
cufflinks 0.013     Low Low
cufflinks 0.064     Low  
cufflinks 0.027     Low  
cufflinks 0.085     Low High
cufflinks 0.023     Low  
cufflinks 0.011     Low Low
cufflinks 0.015     Low  

0 Strain