Gene : Seita.5G218500 S. italica v2.2
Defline:  (1 of 1) PTHR15835:SF2 - NUCLEAR-INTERACTING PARTNER OF ALK Genomic Order:  2185
Name:  ? Seita.5G218500 Secondary Identifier:  ? PAC:32685201
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G218500 0.5kb upstream 0.5kb upstream 5010 true scaffold_5: 27805741-27810750 Setaria italica
Seita.5G218500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 27805741-27806240 Setaria italica
Seita.5G218500 0.5kb downstream 0.5kb downstream 5010 true scaffold_5: 27806241-27811250 Setaria italica
Seita.5G218500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 27810751-27811250 Setaria italica
Seita.5G218500 1.0kb upstream 1.0kb upstream 5510 true scaffold_5: 27805241-27810750 Setaria italica
Seita.5G218500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 27805241-27806240 Setaria italica
Seita.5G218500 1.0kb downstream 1.0kb downstream 5510 true scaffold_5: 27806241-27811750 Setaria italica
Seita.5G218500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 27810751-27811750 Setaria italica
Seita.5G218500 2.0kb upstream 2.0kb upstream 6510 true scaffold_5: 27804241-27810750 Setaria italica
Seita.5G218500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 27804241-27806240 Setaria italica
Seita.5G218500 2.0kb downstream 2.0kb downstream 6510 true scaffold_5: 27806241-27812750 Setaria italica
Seita.5G218500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 27810751-27812750 Setaria italica
Seita.5G218500 5.0kb upstream 5.0kb upstream 9510 true scaffold_5: 27801241-27810750 Setaria italica
Seita.5G218500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 27801241-27806240 Setaria italica
Seita.5G218500 5.0kb downstream 5.0kb downstream 9510 true scaffold_5: 27806241-27815750 Setaria italica
Seita.5G218500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 27810751-27815750 Setaria italica
Seita.5G218500 10.0kb upstream 10.0kb upstream 14510 true scaffold_5: 27796241-27810750 Setaria italica
Seita.5G218500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 27796241-27806240 Setaria italica
Seita.5G218500 10.0kb downstream 10.0kb downstream 14510 true scaffold_5: 27806241-27820750 Setaria italica
Seita.5G218500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 27810751-27820750 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183946 5267 Panicoideae View MSA
124576571 5269 Grass View MSA
122048012 5273 Angiosperm View MSA
121349794 5274 Embryophyte View MSA
123428489 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.897     High High
cufflinks 10.786        
cufflinks 11.213     High  
cufflinks 10.854        
cufflinks 8.458       Low
cufflinks 12.027        
cufflinks 10.67        
cufflinks 9.754        
cufflinks 9.01       Low
cufflinks 10.742        
cufflinks 11.888        
cufflinks 11.95        
cufflinks 10.229        
cufflinks 9.368        
cufflinks 11.881        
cufflinks 16.321     High High
cufflinks 11.912        
cufflinks 21.686     High High
cufflinks 8.485       Low
cufflinks 10.499        

0 Strain