Gene : Seita.5G222700 S. italica v2.2
Defline:  (1 of 2) KOG3114 - Uncharacterized conserved protein Genomic Order:  2227
Name:  ? Seita.5G222700 Secondary Identifier:  ? PAC:32684851
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G222700 0.5kb upstream 0.5kb upstream 3379 true scaffold_5: 28287772-28291150 Setaria italica
Seita.5G222700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28290651-28291150 Setaria italica
Seita.5G222700 0.5kb downstream 0.5kb downstream 3379 true scaffold_5: 28287272-28290650 Setaria italica
Seita.5G222700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28287272-28287771 Setaria italica
Seita.5G222700 1.0kb upstream 1.0kb upstream 3879 true scaffold_5: 28287772-28291650 Setaria italica
Seita.5G222700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28290651-28291650 Setaria italica
Seita.5G222700 1.0kb downstream 1.0kb downstream 3879 true scaffold_5: 28286772-28290650 Setaria italica
Seita.5G222700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28286772-28287771 Setaria italica
Seita.5G222700 2.0kb upstream 2.0kb upstream 4879 true scaffold_5: 28287772-28292650 Setaria italica
Seita.5G222700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28290651-28292650 Setaria italica
Seita.5G222700 2.0kb downstream 2.0kb downstream 4879 true scaffold_5: 28285772-28290650 Setaria italica
Seita.5G222700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28285772-28287771 Setaria italica
Seita.5G222700 5.0kb upstream 5.0kb upstream 7879 true scaffold_5: 28287772-28295650 Setaria italica
Seita.5G222700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28290651-28295650 Setaria italica
Seita.5G222700 5.0kb downstream 5.0kb downstream 7879 true scaffold_5: 28282772-28290650 Setaria italica
Seita.5G222700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28282772-28287771 Setaria italica
Seita.5G222700 10.0kb upstream 10.0kb upstream 12879 true scaffold_5: 28287772-28300650 Setaria italica
Seita.5G222700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28290651-28300650 Setaria italica
Seita.5G222700 10.0kb downstream 10.0kb downstream 12879 true scaffold_5: 28277772-28290650 Setaria italica
Seita.5G222700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28277772-28287771 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183776 5267 Panicoideae View MSA
124570968 5269 Grass View MSA
122045240 5273 Angiosperm View MSA
121344088 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.945        
cufflinks 14.153     High High
cufflinks 2.886       Low
cufflinks 3.418       Low
cufflinks 4.102       Low
cufflinks 11.46        
cufflinks 7.595        
cufflinks 9.503        
cufflinks 7.196        
cufflinks 18.784     High High
cufflinks 10.899        
cufflinks 8.855        
cufflinks 8.244        
cufflinks 5.142        
cufflinks 12.993        
cufflinks 4.057       Low
cufflinks 11.533        
cufflinks 3.74       Low
cufflinks 4.561        
cufflinks 14.22       High

0 Strain