Gene : Seita.5G223800 S. italica v2.2
Defline:  (1 of 1) KOG0919 - C-5 cytosine-specific DNA methylase Genomic Order:  2238
Name:  ? Seita.5G223800 Secondary Identifier:  ? PAC:32686223
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G223800 0.5kb upstream 0.5kb upstream 4015 true scaffold_5: 28362802-28366816 Setaria italica
Seita.5G223800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28366317-28366816 Setaria italica
Seita.5G223800 0.5kb downstream 0.5kb downstream 4015 true scaffold_5: 28362302-28366316 Setaria italica
Seita.5G223800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28362302-28362801 Setaria italica
Seita.5G223800 1.0kb upstream 1.0kb upstream 4515 true scaffold_5: 28362802-28367316 Setaria italica
Seita.5G223800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28366317-28367316 Setaria italica
Seita.5G223800 1.0kb downstream 1.0kb downstream 4515 true scaffold_5: 28361802-28366316 Setaria italica
Seita.5G223800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28361802-28362801 Setaria italica
Seita.5G223800 2.0kb upstream 2.0kb upstream 5515 true scaffold_5: 28362802-28368316 Setaria italica
Seita.5G223800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28366317-28368316 Setaria italica
Seita.5G223800 2.0kb downstream 2.0kb downstream 5515 true scaffold_5: 28360802-28366316 Setaria italica
Seita.5G223800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28360802-28362801 Setaria italica
Seita.5G223800 5.0kb upstream 5.0kb upstream 8515 true scaffold_5: 28362802-28371316 Setaria italica
Seita.5G223800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28366317-28371316 Setaria italica
Seita.5G223800 5.0kb downstream 5.0kb downstream 8515 true scaffold_5: 28357802-28366316 Setaria italica
Seita.5G223800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28357802-28362801 Setaria italica
Seita.5G223800 10.0kb upstream 10.0kb upstream 13515 true scaffold_5: 28362802-28376316 Setaria italica
Seita.5G223800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28366317-28376316 Setaria italica
Seita.5G223800 10.0kb downstream 10.0kb downstream 13515 true scaffold_5: 28352802-28366316 Setaria italica
Seita.5G223800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28352802-28362801 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185926 5267 Panicoideae View MSA
124578922 5269 Grass View MSA
122042989 5273 Angiosperm View MSA
121345070 5274 Embryophyte View MSA
123423972 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.167       High
cufflinks 4.417        
cufflinks 4.566        
cufflinks 4.889        
cufflinks 3.671       Low
cufflinks 4.774        
cufflinks 4.094        
cufflinks 4.377        
cufflinks 3.324       Low
cufflinks 5.248        
cufflinks 4.537        
cufflinks 6.197       High
cufflinks 5.442        
cufflinks 3.381       Low
cufflinks 4.229        
cufflinks 6.055       High
cufflinks 6.236       High
cufflinks 6.464       High
cufflinks 3.532       Low
cufflinks 5.642        

0 Strain