Gene : Seita.5G226800 S. italica v2.2
Defline:  (1 of 2) PTHR22761:SF8 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 32 HOMOLOG 1-RELATED Genomic Order:  2268
Name:  ? Seita.5G226800 Secondary Identifier:  ? PAC:32683330
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G226800 0.5kb upstream 0.5kb upstream 4145 true scaffold_5: 28824231-28828375 Setaria italica
Seita.5G226800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28824231-28824730 Setaria italica
Seita.5G226800 0.5kb downstream 0.5kb downstream 4145 true scaffold_5: 28824731-28828875 Setaria italica
Seita.5G226800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28828376-28828875 Setaria italica
Seita.5G226800 1.0kb upstream 1.0kb upstream 4645 true scaffold_5: 28823731-28828375 Setaria italica
Seita.5G226800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28823731-28824730 Setaria italica
Seita.5G226800 1.0kb downstream 1.0kb downstream 4645 true scaffold_5: 28824731-28829375 Setaria italica
Seita.5G226800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28828376-28829375 Setaria italica
Seita.5G226800 2.0kb upstream 2.0kb upstream 5645 true scaffold_5: 28822731-28828375 Setaria italica
Seita.5G226800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28822731-28824730 Setaria italica
Seita.5G226800 2.0kb downstream 2.0kb downstream 5645 true scaffold_5: 28824731-28830375 Setaria italica
Seita.5G226800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28828376-28830375 Setaria italica
Seita.5G226800 5.0kb upstream 5.0kb upstream 8645 true scaffold_5: 28819731-28828375 Setaria italica
Seita.5G226800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28819731-28824730 Setaria italica
Seita.5G226800 5.0kb downstream 5.0kb downstream 8645 true scaffold_5: 28824731-28833375 Setaria italica
Seita.5G226800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28828376-28833375 Setaria italica
Seita.5G226800 10.0kb upstream 10.0kb upstream 13645 true scaffold_5: 28814731-28828375 Setaria italica
Seita.5G226800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28814731-28824730 Setaria italica
Seita.5G226800 10.0kb downstream 10.0kb downstream 13645 true scaffold_5: 28824731-28838375 Setaria italica
Seita.5G226800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28828376-28838375 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186504 5267 Panicoideae View MSA
124589159 5269 Grass View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.656     High  
cufflinks 31.861     High  
cufflinks 37.768     High  
cufflinks 37.326     High  
cufflinks 40.134     High  
cufflinks 26.939     High Low
cufflinks 30.404     High  
cufflinks 40.704     High  
cufflinks 33.111     High  
cufflinks 44.787     High  
cufflinks 41.191     High  
cufflinks 42.273     High  
cufflinks 52.29     High High
cufflinks 48.583     High High
cufflinks 53.562     High High
cufflinks 22.117     High Low
cufflinks 44.076     High  
cufflinks 27.584     High Low
cufflinks 51.053     High High
cufflinks 40.411     High  

0 Strain