Gene : Seita.5G227200 S. italica v2.2
Genomic Order:  2272 Name:  ? Seita.5G227200
Secondary Identifier:  ? PAC:32683192
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G227200 0.5kb upstream 0.5kb upstream 2459 true scaffold_5: 28866713-28869171 Setaria italica
Seita.5G227200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28866713-28867212 Setaria italica
Seita.5G227200 0.5kb downstream 0.5kb downstream 2459 true scaffold_5: 28867213-28869671 Setaria italica
Seita.5G227200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28869172-28869671 Setaria italica
Seita.5G227200 1.0kb upstream 1.0kb upstream 2959 true scaffold_5: 28866213-28869171 Setaria italica
Seita.5G227200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28866213-28867212 Setaria italica
Seita.5G227200 1.0kb downstream 1.0kb downstream 2959 true scaffold_5: 28867213-28870171 Setaria italica
Seita.5G227200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28869172-28870171 Setaria italica
Seita.5G227200 2.0kb upstream 2.0kb upstream 3959 true scaffold_5: 28865213-28869171 Setaria italica
Seita.5G227200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28865213-28867212 Setaria italica
Seita.5G227200 2.0kb downstream 2.0kb downstream 3959 true scaffold_5: 28867213-28871171 Setaria italica
Seita.5G227200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28869172-28871171 Setaria italica
Seita.5G227200 5.0kb upstream 5.0kb upstream 6959 true scaffold_5: 28862213-28869171 Setaria italica
Seita.5G227200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28862213-28867212 Setaria italica
Seita.5G227200 5.0kb downstream 5.0kb downstream 6959 true scaffold_5: 28867213-28874171 Setaria italica
Seita.5G227200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28869172-28874171 Setaria italica
Seita.5G227200 10.0kb upstream 10.0kb upstream 11959 true scaffold_5: 28857213-28869171 Setaria italica
Seita.5G227200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28857213-28867212 Setaria italica
Seita.5G227200 10.0kb downstream 10.0kb downstream 11959 true scaffold_5: 28867213-28879171 Setaria italica
Seita.5G227200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28869172-28879171 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188871 5267 Panicoideae View MSA
124581221 5269 Grass View MSA
122049160 5273 Angiosperm View MSA
121311273 5274 Embryophyte View MSA
123348588 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.707        
cufflinks 0.458        
cufflinks 0.473        
cufflinks 0.515        
cufflinks 0.455        
cufflinks 0.492        
cufflinks 0.568        
cufflinks 0.979       High
cufflinks 0.562        
cufflinks 1.988       High
cufflinks 0.65        
cufflinks 0.925       High
cufflinks 0.34       Low
cufflinks 0.772        
cufflinks 0.639        
cufflinks 0.491        
cufflinks 0.701        
cufflinks 0.727        
cufflinks 0.567        
cufflinks 0.654        

0 Strain